chr1 : 12,654,676 12,655,003
327 bp 89 TFs 0 linked genes
This 327 bp open chromatin element has no linked target genes and is bound by 89 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:12,649,676 – 12,660,003
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 327 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 223 bp overlap
ARNTL 1 dataset
ChIP HepG2 ENCFF217GCH 327 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 192 bp overlap
BHLHE40 3 datasets
ChIP Hep-G2 ENCSR000EDT.BHLHE40.Hep-G2 228 bp overlap
ChIP HepG2 ENCFF272ULI 191 bp overlap
ChIP HepG2 ENCFF961RID 285 bp overlap
CBFB 1 dataset
ChIP HepG2 ENCFF349HFU 327 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 218 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 210 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 305 bp overlap
CREB1 1 dataset
ChIP HepG2 ENCFF245CBB 309 bp overlap
CREM 1 dataset
ChIP HepG2 ENCFF049UDY 327 bp overlap
CTNNB1 1 dataset
ChIP LS180 GSE31939.CTNNB1.LS180 185 bp overlap
EP300 2 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 158 bp overlap
ChIP HepG2 ENCFF354ACD 309 bp overlap
ESR1 17 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 157 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 188 bp overlap
ChIP MCF-7_E2 GSE108883.ESR1.MCF-7_E2 204 bp overlap
ChIP MCF-7_E2_90min GSE109820.ESR1.MCF-7_E2_90min 305 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 211 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 180 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 109 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 137 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 144 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 178 bp overlap
ChIP MCF-7_estradiol-Dex_75min GSE99626.ESR1.MCF-7_estradiol-Dex_75min 121 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 182 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 230 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 199 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 179 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 180 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 142 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 222 bp overlap
FOXA1 30 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 327 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 327 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 327 bp overlap
ChIP HepG2 ENCFF207NVJ 325 bp overlap
ChIP HepG2 ENCFF361KNY 228 bp overlap
ChIP HepG2 ENCFF740VZW 254 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 133 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 228 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 220 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 238 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 185 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 311 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 205 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 291 bp overlap
ChIP MCF-7_shCTRL GSE132432.FOXA1.MCF-7_shCTRL 327 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 327 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 327 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 327 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 196 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 189 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 233 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 327 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 185 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 164 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 174 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 160 bp overlap
ChIP liver ENCFF537QZV 327 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 327 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 179 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 91 bp overlap
FOXA2 15 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 327 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 327 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 327 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 254 bp overlap
ChIP DE DE-FOXA2-1 327 bp overlap
ChIP DE DE-FOXA2-2 327 bp overlap
ChIP HepG2 ENCFF533COJ 305 bp overlap
ChIP HepG2 ENCFF570ABM 324 bp overlap
ChIP HepG2 ENCFF894AYY 325 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 266 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 327 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 327 bp overlap
ChIP liver ENCFF888VJF 303 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 192 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 327 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 242 bp overlap
FOXJ3 1 dataset
ChIP HepG2 ENCFF430OSX 327 bp overlap
FOXK1 2 datasets
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 140 bp overlap
ChIP HepG2 ENCFF635XWY 327 bp overlap
FOXP1 2 datasets
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 235 bp overlap
ChIP HepG2 ENCFF823ERM 160 bp overlap
FOXP4 2 datasets
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 212 bp overlap
ChIP HepG2 ENCFF462ULY 327 bp overlap
FOXQ1 1 dataset
ChIP HepG2 ENCFF164USD 327 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 327 bp overlap
ChIP DE DE-GATA4-2 327 bp overlap
ChIP foregut GSE117136.GATA4.foregut 327 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 327 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 327 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 327 bp overlap
ChIP DE DE-GATA6-2 327 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 139 bp overlap
ChIP foregut GSE117136.GATA6.foregut 327 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 327 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 297 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 327 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 216 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 327 bp overlap
HDAC2 3 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 252 bp overlap
ChIP HepG2 ENCFF087XCR 324 bp overlap
ChIP HepG2 ENCFF990GUQ 327 bp overlap
HHEX 2 datasets
ChIP Hep-G2 ENCSR656JZL.HHEX.Hep-G2 254 bp overlap
ChIP HepG2 ENCFF618PVM 311 bp overlap
HMG20A 1 dataset
ChIP HepG2 ENCFF599VWU 120 bp overlap
HMG20B 1 dataset
ChIP HepG2 ENCFF756WYV 89 bp overlap
HNF1A 2 datasets
ChIP HepG2 ENCFF540TRC 327 bp overlap
ChIP HepG2 ENCFF540TRC 241 bp overlap
HNF4A 7 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 243 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 81 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 323 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 246 bp overlap
ChIP HepG2 ENCFF146SSF 327 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
ChIP liver ENCFF449HPV 327 bp overlap
HNF4G 2 datasets
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 120 bp overlap
ChIP HepG2 ENCFF323ATZ 282 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 252 bp overlap
HOXD1 1 dataset
ChIP HepG2 ENCFF462DCD 327 bp overlap
ISL2 2 datasets
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 218 bp overlap
ChIP HepG2 ENCFF742RIP 327 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 226 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 228 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 327 bp overlap
MAX 2 datasets
ChIP HepG2 ENCFF507HCX 327 bp overlap
ChIP HepG2 ENCFF507HCX 292 bp overlap
MIXL1 1 dataset
ChIP HepG2 ENCFF817YFO 327 bp overlap
MNX1 2 datasets
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 173 bp overlap
ChIP HepG2 ENCFF938KYA 327 bp overlap
NFIL3 1 dataset
ChIP HepG2 ENCFF686VLI 325 bp overlap
NKX3-1 1 dataset
ChIP HepG2 ENCFF031ZWH 327 bp overlap
NR2F1 2 datasets
ChIP HepG2 ENCFF518ZRY 327 bp overlap
ChIP HepG2 ENCFF953UJL 301 bp overlap
NR2F2 3 datasets
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 201 bp overlap
ChIP HepG2 ENCFF483TVJ 226 bp overlap
ChIP MCF-7 ENCFF329FZB 319 bp overlap
NR2F6 3 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 267 bp overlap
ChIP HepG2 ENCFF429VKC 264 bp overlap
ChIP HepG2 ENCFF514UJI 315 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 145 bp overlap
ONECUT1 2 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 141 bp overlap
ChIP HepG2 ENCFF243FIR 307 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 327 bp overlap
PAXIP1 1 dataset
ChIP HepG2 ENCFF526NOJ 327 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 250 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 215 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 275 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 327 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 327 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 327 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 314 bp overlap
ChIP stomach ENCFF820WZN 309 bp overlap
PPARG 3 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 154 bp overlap
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 127 bp overlap
ChIP HepG2 ENCFF329FBJ 327 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 327 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 259 bp overlap
RERE 1 dataset
ChIP HepG2 ENCFF145QRA 167 bp overlap
RORB 1 dataset
ChIP WTC11 ENCFF444ARW 214 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 261 bp overlap
RXRA 3 datasets
ChIP HepG2 ENCFF204YVO 291 bp overlap
ChIP HepG2 ENCFF763IEA 145 bp overlap
ChIP liver ENCFF807CIA 327 bp overlap
RXRB 1 dataset
ChIP HepG2 ENCFF539ZAY 327 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 185 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 327 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 121 bp overlap
ChIP HepG2 ENCFF615GTE 166 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 229 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 290 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 327 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 219 bp overlap
ChIP HepG2 ENCFF767OCK 179 bp overlap
SP5 1 dataset
ChIP HepG2 ENCFF931FHV 313 bp overlap
TBX2 2 datasets
ChIP Hep-G2 ENCSR410FEH.TBX2.Hep-G2 173 bp overlap
ChIP HepG2 ENCFF811TLA 327 bp overlap
TBX3 1 dataset
ChIP HepG2 ENCFF178RIL 327 bp overlap
TCF12 1 dataset
ChIP HepG2 ENCFF802XCI 327 bp overlap
TCF7 2 datasets
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 230 bp overlap
ChIP HepG2 ENCFF628OFQ 125 bp overlap
TCF7L2 3 datasets
ChIP Hep-G2 ENCSR346BOD.TCF7L2.Hep-G2 256 bp overlap
ChIP HepG2 ENCFF510OLG 127 bp overlap
ChIP Panc1 ENCFF829HHL 327 bp overlap
TFAP4 3 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 135 bp overlap
ChIP HepG2 ENCFF030SRU 317 bp overlap
ChIP HepG2 ENCFF932XOY 238 bp overlap
THAP11 1 dataset
ChIP HepG2 ENCFF272SWH 327 bp overlap
TP53 4 datasets
ChIP K-562_R282W_Daunorubicin GSE131484.TP53.K-562_R282W_Daunorubicin 74 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 69 bp overlap
ChIP MOLM-13_R282W_DMSO GSE131484.TP53.MOLM-13_R282W_DMSO 61 bp overlap
ChIP MOLM-13_R282W_Daunorubicin GSE131484.TP53.MOLM-13_R282W_Daunorubicin 104 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 54 bp overlap
USF1 3 datasets
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 108 bp overlap
ChIP HepG2 ENCFF201JKA 182 bp overlap
ChIP HepG2 ENCFF807KYJ 201 bp overlap
USF2 1 dataset
ChIP HepG2 ENCFF433IUE 327 bp overlap
ZBTB7B 1 dataset
ChIP HepG2 ENCFF763OCV 327 bp overlap
ZFHX3 1 dataset
ChIP HepG2 ENCFF082SJV 327 bp overlap
ZNF281 1 dataset
ChIP HepG2 ENCFF585QNU 316 bp overlap
ZNF503 1 dataset
ChIP HepG2 ENCFF923HZL 327 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 120 bp overlap
ZNF609 2 datasets
ChIP Hep-G2 ENCSR407BPU.ZNF609.Hep-G2 213 bp overlap
ChIP HepG2 ENCFF900FRP 327 bp overlap