chr5 : 149,424,439 149,424,708
269 bp 88 TFs 2 linked genes
This 269 bp open chromatin element is linked to MIR143 and MIR145 and is bound by 88 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
MIR143 4.2 kb Proximal Proximity
MIR145 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:149,419,439 – 149,429,708
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 85 bp overlap
ARID1B 1 dataset
ChIP MCF-7_shJUN GSE128445.ARID1B.MCF-7_shJUN 85 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 148 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 187 bp overlap
BRD4 1 dataset
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 200 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 119 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 156 bp overlap
CTCF 1 dataset
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 79 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 148 bp overlap
EBF3 2 datasets
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 188 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 264 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 269 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 233 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 240 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 106 bp overlap
MED12 2 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 138 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 103 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYB 1 dataset
ChIP PF-382 GSE94000.MYB.PF-382 188 bp overlap
MYC 2 datasets
ChIP P493-6_24HR GSE125863.MYC.P493-6_24HR 206 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 166 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 191 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 269 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 127 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 256 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 74 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 126 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 54 bp overlap
PHF8 1 dataset
ChIP HepG2 ENCFF065NWR 269 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 8 datasets
ChIP H1 ENCFF566JSR 269 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 269 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 269 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 269 bp overlap
ChIP sigmoid colon ENCFF101ILL 260 bp overlap
ChIP sigmoid colon ENCFF725QFT 269 bp overlap
ChIP sigmoid colon ENCFF748YVT 269 bp overlap
ChIP sigmoid colon ENCFF754JQR 269 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 259 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 139 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 269 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 114 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 225 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 194 bp overlap
SMARCA4 3 datasets
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 269 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 269 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 146 bp overlap
SMARCC1 4 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 269 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 269 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 213 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 183 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 148 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 207 bp overlap
SP1 2 datasets
ChIP HEK293 GSE76494.SP1.HEK293 187 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 149 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 174 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 159 bp overlap
SPI1 1 dataset
ChIP GM12878 ENCFF134LCP 74 bp overlap
STAT1 2 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
Stat5a 2 datasets
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 182 bp overlap
TBP 1 dataset
ChIP hESC_8h GSE122298.TBP.hESC_8h 111 bp overlap
TBX5 3 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 167 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 217 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 176 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 216 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 251 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 194 bp overlap
TFAP4 2 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF932XOY 269 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF2 1 dataset
ChIP HepG2 ENCFF433IUE 73 bp overlap
YEATS4 1 dataset
ChIP HepG2 ENCFF340OIC 256 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZFP36 7 datasets
ChIP A549 ENCFF505LUC 229 bp overlap
ChIP GM12878 ENCFF234WRG 269 bp overlap
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 256 bp overlap
ChIP Hep-G2 ENCSR382XLA.ZFP36.Hep-G2 226 bp overlap
ChIP HepG2 ENCFF486SQU 240 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 260 bp overlap
ChIP K562 ENCFF255RZG 248 bp overlap
ZMYM3 3 datasets
ChIP Hep-G2 ENCSR848YWD.ZMYM3.Hep-G2 163 bp overlap
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 182 bp overlap
ChIP HepG2 ENCFF667RVD 269 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF281 2 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF436 1 dataset
ChIP HEK293 GSE76494.ZNF436.HEK293 254 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 156 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 168 bp overlap