chr4 : 104,915,816 104,916,246
430 bp 87 TFs 1 linked gene
This 430 bp open chromatin element is linked to ENSG00000248373 and is bound by 87 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000248373 8.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:104,910,816 – 104,921,246
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 152 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 309 bp overlap
ATF3 2 datasets
ChIP liver ENCSR205FOW.ATF3.liver 182 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 203 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 283 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 252 bp overlap
BCL6B 2 datasets
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 285 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 430 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 262 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 319 bp overlap
CBFB 1 dataset
ChIP WTC11 ENCFF113HIY 427 bp overlap
CDX2 2 datasets
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
Motif ES_0h ES_0h-CDX2_MA0465.3 8 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 283 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 182 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 264 bp overlap
ChIP H1 ENCFF126NLU 312 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 338 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 255 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 215 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 234 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 256 bp overlap
EGR1 3 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 215 bp overlap
ChIP liver ENCFF130MBW 189 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 280 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 338 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 202 bp overlap
FOXA1 3 datasets
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP liver ERP002306.FOXA1.liver 181 bp overlap
FOXA2 3 datasets
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP liver ENCFF888VJF 345 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 188 bp overlap
FOXD2 1 dataset
Motif ES_0h ES_0h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
GFI1 2 datasets
ChIP Hep-G2 ENCSR849FVL.GFI1.Hep-G2 232 bp overlap
ChIP HepG2 ENCFF472INF 430 bp overlap
HDAC6 1 dataset
ChIP WA01 ENCSR000ATQ.HDAC6.WA01 119 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 245 bp overlap
HNF4A 7 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 195 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 113 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 138 bp overlap
ChIP HepG2 ENCFF146SSF 318 bp overlap
ChIP liver ENCFF354NRH 263 bp overlap
ChIP liver ENCFF449HPV 259 bp overlap
ChIP liver ERP002306.HNF4A.liver 206 bp overlap
HSF2 2 datasets
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
Motif ES_0h ES_0h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
Motif ES_0h ES_0h-HSF4_MA0771.1 13 bp overlap
Hand1::Tcf3 2 datasets
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 268 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 250 bp overlap
JUN 4 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 344 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 362 bp overlap
ChIP H1 ENCFF621PNP 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 370 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 264 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 430 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 395 bp overlap
KLF4 1 dataset
ChIP WA09 GSE105028.KLF4.WA09 272 bp overlap
LEF1 1 dataset
ChIP hESC GSE64758.LEF1.hESC 250 bp overlap
MAFK 2 datasets
ChIP H1 ENCFF854XWE 285 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 192 bp overlap
MAX 2 datasets
ChIP WA01 ENCSR000EUP.MAX.WA01 252 bp overlap
ChIP liver ENCSR521IID.MAX.liver 264 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 245 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 255 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 430 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 411 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 279 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 430 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 430 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 430 bp overlap
ChIP hESC GSE18292.NANOG.hESC 353 bp overlap
ChIP hESC GSE20650.NANOG.hESC 303 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 368 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 334 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 301 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 311 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 269 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 332 bp overlap
NR2F2 2 datasets
ChIP liver ENCFF565JGD 390 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 206 bp overlap
Nr2e3 2 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif ES_0h ES_0h-Nr2e3_MA0164.2 6 bp overlap
OSR2 2 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 334 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 306 bp overlap
ChIP H1 ENCFF833NJP 307 bp overlap
POU2F1::SOX2 3 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F3 4 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 250 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU5F1 19 datasets
ChIP BG03 GSE21614.POU5F1.BG03 323 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 169 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 430 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 345 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 421 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 289 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 212 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 357 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 377 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 293 bp overlap
ChIP hESC GSE20650.POU5F1.hESC 196 bp overlap
ChIP hESC GSE17917.POU5F1.hESC 138 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 430 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 430 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 380 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 290 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 281 bp overlap
PRDM14 3 datasets
ChIP hESC GSE138674.PRDM14.hESC 430 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 430 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 289 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm14 2 datasets
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Motif ES_0h ES_0h-Prdm14_MA1998.2 8 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 338 bp overlap
ChIP liver ENCFF522JHE 401 bp overlap
REST 1 dataset
ChIP liver ENCSR867WPH.REST.liver 222 bp overlap
RNF2 4 datasets
ChIP WA01 GSE104690.RNF2.WA01 287 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 266 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 430 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 430 bp overlap
RXRA 3 datasets
ChIP H1 ENCFF570NHK 201 bp overlap
ChIP WA01 ENCSR000BJW.RXRA.WA01 273 bp overlap
ChIP liver ENCFF077DAP 418 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 262 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 230 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 340 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 367 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 344 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 341 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 280 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 348 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 429 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 239 bp overlap
ChIP hESC GSE69479.SOX2.hESC 244 bp overlap
ChIP hESC GSE18292.SOX2.hESC 135 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 380 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 313 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 297 bp overlap
ChIP liver ENCFF769YSM 312 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 261 bp overlap
SUZ12 1 dataset
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 362 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 224 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 81 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 405 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 430 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 348 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 430 bp overlap
ChIP H1 ENCFF778PAX 114 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 185 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 210 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 273 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 197 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 141 bp overlap
YY1 3 datasets
ChIP liver ENCFF400MBC 430 bp overlap
ChIP liver ENCFF515BWJ 430 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 347 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 380 bp overlap
ZNF12 2 datasets
ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 286 bp overlap
ChIP HepG2 ENCFF347LSW 92 bp overlap
ZNF143 3 datasets
ChIP WA01 ENCSR000EBW.ZNF143.WA01 142 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 277 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 268 bp overlap
ZNF274 2 datasets
ChIP H1 ENCFF434LDY 430 bp overlap
ChIP WA01 ENCSR000EUN.ZNF274.WA01 225 bp overlap
ZNF382 2 datasets
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 225 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 227 bp overlap
ZNF574 2 datasets
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
Motif ES_0h ES_0h-ZNF574_MA1982.2 14 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZSCAN4 1 dataset
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap