chr3 : 194,054,625 – 194,055,528
903 bp 85 TFs 0 linked genes
This 903 bp open chromatin element has no linked target genes and is bound by 85 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:194,049,625 – 194,060,528
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 192 bp overlap
ATF6 2 datasets
Motif DE_12h DE_12h-ATF6_MA1466.2 13 bp overlap
Motif DE_24h DE_24h-ATF6_MA1466.2 13 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 328 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 245 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 162 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 295 bp overlap
CEBPA 2 datasets
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
Motif DE_24h DE_24h-CEBPA_MA0102.5 10 bp overlap
CEBPD 2 datasets
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
Motif DE_24h DE_24h-CEBPD_MA0836.3 8 bp overlap
CREB3L4 2 datasets
Motif DE_12h DE_12h-CREB3L4_MA1474.2 10 bp overlap
Motif DE_24h DE_24h-CREB3L4_MA1474.2 10 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 216 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 321 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 252 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 143 bp overlap
ChIP hESC GSE26097.EOMES.hESC 422 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 223 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 324 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 433 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 489 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 429 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 550 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 493 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 210 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 411 bp overlap
ChIP H1 ENCFF939VKA 218 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 73 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 224 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 265 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 296 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 264 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 87 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 443 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 378 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 440 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 578 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 700 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 582 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 206 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 185 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 118 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 93 bp overlap
LHX6 2 datasets
Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap
Motif DE_24h DE_24h-LHX6_MA0658.2 8 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 174 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 571 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 332 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 350 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 243 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 339 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 242 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 129 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 300 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif DE_24h DE_24h-NFIA_MA0670.2 6 bp overlap
NFIC 2 datasets
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
Motif DE_24h DE_24h-NFIC_MA0161.3 7 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif DE_24h DE_24h-NFIX_MA0671.2 6 bp overlap
NIPBL 2 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 271 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 191 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 313 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 55 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 184 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 572 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 269 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 299 bp overlap
ChIP hESC GSE22767.PRDM14.hESC 300 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 257 bp overlap
Plagl1 2 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 232 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 197 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 155 bp overlap
RBPJ 1 dataset
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 258 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 286 bp overlap
Runx1 1 dataset
Motif DE_24h DE_24h-Runx1_MA0002.3 9 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 330 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 894 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 775 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 611 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 903 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 892 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 531 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 258 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 167 bp overlap
SMARCA4 3 datasets
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 188 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 237 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 272 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 140 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 279 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 244 bp overlap
SOX2 2 datasets
ChIP H9 GSE46837.SOX2.H9 163 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 313 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 270 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 217 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 391 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 460 bp overlap
SREBF2 1 dataset
ChIP HeLa-S3 ENCSR611WZO.SREBF2.HeLa-S3 232 bp overlap
SS18 5 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 272 bp overlap
ChIP Aska-SS GSE108025.SS18.Aska-SS 269 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 286 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 247 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 601 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 250 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 303 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 279 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 321 bp overlap
TBX3 2 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 216 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 247 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 282 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 139 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 161 bp overlap
USF2 2 datasets
ChIP GM12878 GSE97661.USF2.GM12878 154 bp overlap
ChIP WTC11 ENCFF139JAW 417 bp overlap
YY1 3 datasets
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 102 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 221 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 188 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 328 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 255 bp overlap
ChIP K562 ENCFF255RZG 140 bp overlap
ZMYM3 1 dataset
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 149 bp overlap
ZNF143 2 datasets
ChIP WA01 ENCSR000EBW.ZNF143.WA01 121 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 210 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif DE_24h DE_24h-ZNF184_MA2120.1 13 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 381 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 377 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 115 bp overlap
ZNF436 1 dataset
ChIP HEK293 GSE76494.ZNF436.HEK293 109 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
ZNF680 1 dataset
Motif DE_24h DE_24h-ZNF680_MA1729.2 11 bp overlap
Zfp809 1 dataset
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
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