chr3 : 150,607,417 150,607,924
507 bp 82 TFs 2 linked genes
This 507 bp open chromatin element is linked to SELENOT and SERP1 and is bound by 82 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SELENOT 4.1 kb Proximal Proximity
SERP1 4.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:150,602,417 – 150,612,924
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
AR 3 datasets
ChIP 22Rv1 GSE85558.AR.22Rv1 257 bp overlap
ChIP LNCaP GSE80256.AR.LNCaP 291 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 237 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 270 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 267 bp overlap
ChIP K562 ENCFF673OEZ 396 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 141 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 285 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 165 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 326 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 507 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 462 bp overlap
ChIP DE DE-FOXA2-2 493 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 190 bp overlap
GATA2 7 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 248 bp overlap
ChIP HepG2 ENCFF905PYM 371 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 274 bp overlap
ChIP K562 ENCFF830LLA 454 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 185 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 126 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 192 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 507 bp overlap
ChIP DE DE-GATA4-2 507 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 382 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 507 bp overlap
ChIP DE DE-GATA6-2 507 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 222 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 507 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 341 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 386 bp overlap
ChIP foregut GSE117136.GATA6.foregut 276 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 305 bp overlap
ChIP K562 ENCFF928TKZ 440 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 254 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 90 bp overlap
HNF4A 9 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 384 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 303 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 221 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 221 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 349 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 423 bp overlap
ChIP liver ENCFF354NRH 224 bp overlap
ChIP liver ENCFF449HPV 207 bp overlap
ChIP liver ERP002306.HNF4A.liver 203 bp overlap
IKZF1 6 datasets
ChIP GM12878 ENCFF753XDO 204 bp overlap
ChIP GM12878 ENCFF753XDO 382 bp overlap
ChIP GM12878 ENCFF824TGK 507 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 493 bp overlap
ChIP K562 ENCFF348IBL 475 bp overlap
ChIP K562 ENCFF771OHZ 422 bp overlap
IKZF2 5 datasets
ChIP GM12878 ENCFF238LYK 507 bp overlap
ChIP GM12878 ENCFF918AID 507 bp overlap
ChIP GM12878 ENCFF918AID 331 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 344 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 212 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 371 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 383 bp overlap
KDM1A 4 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 244 bp overlap
ChIP K562 ENCFF128TYE 461 bp overlap
ChIP K562 ENCFF133OLU 461 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 142 bp overlap
KMT2A 5 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 507 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 289 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 234 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 393 bp overlap
ChIP THP-1 GSE79899.KMT2A.THP-1 107 bp overlap
LCOR 1 dataset
ChIP K562 ENCFF340MHH 398 bp overlap
MAFF 3 datasets
ChIP HepG2 ENCFF452YUT 111 bp overlap
ChIP K-562 ENCSR000EGI.MAFF.K-562 93 bp overlap
ChIP K562 ENCFF071YKK 146 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 193 bp overlap
ChIP K562 ENCFF455EEO 240 bp overlap
MAFK 3 datasets
ChIP A549 ENCFF371EPR 207 bp overlap
ChIP HepG2 ENCFF743ZOF 129 bp overlap
ChIP K562 ENCFF380WHM 105 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 146 bp overlap
MLLT1 2 datasets
ChIP K-562 ENCSR107GRP.MLLT1.K-562 223 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 54 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR113LAS.MTA2.K-562 186 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 115 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 507 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 259 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 507 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 261 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 192 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 247 bp overlap
NR2C1 4 datasets
ChIP K-562 ENCSR742IDN.NR2C1.K-562 419 bp overlap
ChIP K-562 ENCSR178DEG.NR2C1.K-562 360 bp overlap
ChIP K562 ENCFF239KMA 257 bp overlap
ChIP K562 ENCFF568JLK 163 bp overlap
NR2C2 2 datasets
ChIP K-562 ENCSR750LYM.NR2C2.K-562 432 bp overlap
ChIP K562 ENCFF750AXF 254 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 331 bp overlap
ChIP K562 ENCFF221HJH 497 bp overlap
NR2F2 3 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 209 bp overlap
ChIP K-562 ENCSR000BRS.NR2F2.K-562 146 bp overlap
ChIP K562 ENCFF004YPK 391 bp overlap
NR2F6 1 dataset
ChIP K-562 ENCSR707QWA.NR2F6.K-562 247 bp overlap
PML 2 datasets
ChIP GM12878 ENCFF160JQZ 73 bp overlap
ChIP GM12878 ENCFF160JQZ 278 bp overlap
POLR2A 2 datasets
ChIP GM12892 ENCFF542ZFO 496 bp overlap
ChIP H1 ENCFF566JSR 402 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 369 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 310 bp overlap
POU2F2 3 datasets
ChIP GM12878 ENCFF207RKY 111 bp overlap
ChIP GM12891 ENCFF166YPP 192 bp overlap
ChIP GM12891 ENCSR000BII.POU2F2.GM12891 142 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 190 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 248 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 507 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 128 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 259 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 75 bp overlap
RBFOX2 3 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 140 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 176 bp overlap
ChIP K562 ENCFF967GRF 177 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 142 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 344 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 419 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 465 bp overlap
ChIP liver ENCFF807CIA 451 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 356 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 399 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 315 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 507 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 160 bp overlap
SMARCC1 1 dataset
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 237 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 181 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 341 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 361 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 365 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 435 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAL1 3 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 205 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 275 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 144 bp overlap
TCF12 1 dataset
ChIP K562 ENCFF931DJY 283 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 166 bp overlap
ChIP K562 ENCFF319QZT 300 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 332 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 140 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 297 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 251 bp overlap
WRNIP1 1 dataset
ChIP GM12878 ENCFF384UKU 371 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 298 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 340 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 464 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 196 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 147 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 124 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 186 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 68 bp overlap
ZNF677 2 datasets
ChIP HEK293 ENCFF220HCQ 198 bp overlap
ChIP HEK293 ENCSR279KDC.ZNF677.HEK293 237 bp overlap
ZSCAN29 2 datasets
ChIP K562 ENCFF797SOU 293 bp overlap
ChIP K562 ENCFF797SOU 418 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 195 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 155 bp overlap