chr3 : 146,283,864 146,284,600
736 bp 121 TFs 0 linked genes
This 736 bp open chromatin element has no linked target genes and is bound by 121 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:146,278,864 – 146,289,600
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
121 transcription factors
Source
Cell type
AR 2 datasets
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 257 bp overlap
ChIP LNCaP GSE80256.AR.LNCaP 233 bp overlap
Atf3 2 datasets
Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap
Motif DE_72h DE_72h-Atf3_MA1988.2 7 bp overlap
BACH1 2 datasets
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
Motif DE_72h DE_72h-BACH1_MA1633.2 9 bp overlap
BARX1 1 dataset
Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap
BATF 2 datasets
Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap
Motif DE_72h DE_72h-BATF_MA1634.2 7 bp overlap
BATF3 2 datasets
Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap
Motif DE_72h DE_72h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 2 datasets
Motif DE_60h DE_60h-BATFJUN_MA0462.3 7 bp overlap
Motif DE_72h DE_72h-BATFJUN_MA0462.3 7 bp overlap
BNC2 2 datasets
Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap
Motif DE_72h DE_72h-BNC2_MA1928.2 7 bp overlap
BRD4 2 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 203 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 135 bp overlap
BSX 1 dataset
Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 GSE120104.CCAR2.Hep-G2 156 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 192 bp overlap
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 126 bp overlap
DLX1 1 dataset
Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 140 bp overlap
ChIP hESC GSE26097.EOMES.hESC 245 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 159 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 169 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 227 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 220 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 400 bp overlap
ChIP DE DE-FOXA2-1 564 bp overlap
ChIP DE DE-FOXA2-2 559 bp overlap
Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap
FOXC2 1 dataset
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXG1 1 dataset
Motif DE_60h DE_60h-FOXG1_MA0613.1 8 bp overlap
FOXK1 1 dataset
Motif DE_60h DE_60h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_60h DE_60h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_60h DE_60h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_60h DE_60h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap
FOXP2 2 datasets
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_60h DE_60h-FOXP3_MA0850.1 7 bp overlap
FOXS1 1 dataset
Motif DE_60h DE_60h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_60h DE_60h-Foxf1_MA1606.2 7 bp overlap
Foxj3 1 dataset
Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_60h DE_60h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_60h DE_60h-Foxo3_MA0157.4 7 bp overlap
GATA2 7 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 248 bp overlap
ChIP HepG2 ENCFF905PYM 371 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 438 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 441 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 211 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 215 bp overlap
GATA4 9 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 216 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 160 bp overlap
ChIP DE DE-GATA4-1 667 bp overlap
ChIP DE DE-GATA4-2 727 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 680 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 736 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 627 bp overlap
GATA5 2 datasets
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 21 datasets
ChIP AGS GSE51705.GATA6.AGS 198 bp overlap
ChIP AGS GSE51705.GATA6.AGS 232 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 112 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 192 bp overlap
ChIP DE DE-GATA6-1 641 bp overlap
ChIP DE DE-GATA6-2 713 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 664 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 580 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 525 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 663 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 651 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 657 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 206 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 631 bp overlap
ChIP foregut GSE117136.GATA6.foregut 686 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 279 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 711 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 657 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 452 bp overlap
GBX2 1 dataset
Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap
Gata3 2 datasets
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
HESX1 1 dataset
Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap
HMBOX1 1 dataset
Motif DE_60h DE_60h-HMBOX1_MA0895.2 7 bp overlap
HMG20A 2 datasets
ChIP HepG2 ENCFF599VWU 418 bp overlap
ChIP HepG2 ENCFF599VWU 431 bp overlap
HNF1A 2 datasets
ChIP HepG2 ENCFF540TRC 410 bp overlap
ChIP HepG2 ENCFF540TRC 537 bp overlap
HNF1B 2 datasets
ChIP H9 ERP004206.HNF1B.H9 97 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 317 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 214 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 85 bp overlap
HOXA7 1 dataset
Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap
Hnf1A 1 dataset
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
ISL2 1 dataset
ChIP HepG2 ENCFF742RIP 425 bp overlap
JUN::JUNB 2 datasets
Motif DE_60h DE_60h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_72h DE_72h-JUNJUNB_MA1132.2 8 bp overlap
Jun 2 datasets
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
Motif DE_72h DE_72h-Jun_MA0489.3 8 bp overlap
KLF14 1 dataset
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
LBX2 1 dataset
Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap
Lef1 1 dataset
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MEIS1 2 datasets
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 199 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 2 datasets
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
MSX1 1 dataset
Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 233 bp overlap
Msx3 1 dataset
Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap
NFATC3 1 dataset
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NFIB 1 dataset
Motif DE_60h DE_60h-NFIB_MA1643.2 17 bp overlap
NFIC 1 dataset
Motif DE_60h DE_60h-NFIC_MA1527.2 15 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA1528.2 14 bp overlap
NR2C1 1 dataset
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_60h DE_60h-NR2F1_MA1538.1 15 bp overlap
NR2F6 1 dataset
Motif DE_60h DE_60h-NR2F6_MA1539.1 15 bp overlap
NR3C1 1 dataset
Motif DE_60h DE_60h-NR3C1_MA0113.4 15 bp overlap
Nfat5 1 dataset
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Nobox 1 dataset
Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
PAX3 1 dataset
Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 234 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 230 bp overlap
PKNOX1 1 dataset
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
POU3F1 1 dataset
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
PRDM1 1 dataset
Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 423 bp overlap
Pax7 1 dataset
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
Prdm15 1 dataset
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
RAX 1 dataset
Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 167 bp overlap
Rarb 2 datasets
Motif DE_60h DE_60h-Rarb_MA0858.1 17 bp overlap
Motif DE_60h DE_60h-Rarb_MA0858.1 17 bp overlap
SMAD2 1 dataset
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 470 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 314 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 400 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 64 bp overlap
SMARCC1 1 dataset
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 196 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 518 bp overlap
SP4 1 dataset
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
STAT3 1 dataset
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
TAL1 1 dataset
ChIP ProEs GSE59087.TAL1.ProEs 117 bp overlap
TCF7L2 1 dataset
Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 3 datasets
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 203 bp overlap
TEAD2 1 dataset
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
TRPS1 2 datasets
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
TWIST1 1 dataset
Motif DE_60h DE_60h-TWIST1_MA1123.3 8 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 423 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 226 bp overlap
ZBTB6 1 dataset
Motif DE_60h DE_60h-ZBTB6_MA1581.2 9 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 126 bp overlap
ZNF652 1 dataset
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
ZNF677 1 dataset
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 294 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap