chr3 : 146,134,465 146,134,860
395 bp 101 TFs 0 linked genes
This 395 bp open chromatin element has no linked target genes and is bound by 101 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:146,129,465 – 146,139,860
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 86 bp overlap
ChIP HAP1 GSE108387.ARID1A.HAP1 204 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 269 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 250 bp overlap
Arid5a 1 dataset
Motif DE_12h DE_12h-Arid5a_MA0602.2 8 bp overlap
Atoh1 2 datasets
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap
BRD4 1 dataset
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 201 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 279 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 229 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 74 bp overlap
E2F7 2 datasets
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
Motif ES_0h ES_0h-E2F7_MA0758.1 14 bp overlap
ESR1 3 datasets
ChIP T-47D GSE148277.ESR1.T-47D 186 bp overlap
ChIP T-47D ENCSR000BKN.ESR1.T-47D 126 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 224 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOS 1 dataset
ChIP leiomyoma_PT1063 GSE128230.FOS.leiomyoma_PT1063 56 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE46166.FOSL1.BT-549 191 bp overlap
FOXA1 2 datasets
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 106 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 96 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 66 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 164 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HNF4A 8 datasets
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 90 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 93 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 117 bp overlap
ChIP HepG2 ENCFF146SSF 345 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 104 bp overlap
ChIP liver ENCFF354NRH 118 bp overlap
ChIP liver ENCFF449HPV 191 bp overlap
ChIP liver ERP002306.HNF4A.liver 116 bp overlap
HNF4G 2 datasets
ChIP liver ENCFF170YNZ 164 bp overlap
ChIP liver ENCSR297GII.HNF4G.liver 192 bp overlap
Hoxa13 1 dataset
Motif ES_0h ES_0h-Hoxa13_MA0650.4 8 bp overlap
IRF9 1 dataset
Motif ES_0h ES_0h-IRF9_MA0653.1 15 bp overlap
JUN 11 datasets
ChIP BT-549 GSE46166.JUN.BT-549 328 bp overlap
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 314 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 359 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 295 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 395 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
ChIP H1 ENCFF621PNP 241 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 395 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 382 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 135 bp overlap
JUND 2 datasets
ChIP WA01 ENCSR000EBZ.JUND.WA01 214 bp overlap
ChIP liver ENCSR196HGZ.JUND.liver 98 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 62 bp overlap
KMT2A 2 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 280 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 321 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 202 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT916 GSE128230.MED12.leiomyoma_PT916 81 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 382 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 245 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 357 bp overlap
Msgn1 2 datasets
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 395 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 132 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 340 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 395 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 192 bp overlap
ChIP hESC GSE18292.NANOG.hESC 100 bp overlap
NEUROD1 2 datasets
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 6 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 163 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 147 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 168 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 131 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NKX2-2 1 dataset
Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR168SMX.NR2F2.liver 173 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 343 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Nr2e3 2 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif ES_0h ES_0h-Nr2e3_MA0164.2 6 bp overlap
ONECUT1 4 datasets
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 169 bp overlap
ChIP HepG2 ENCFF243FIR 314 bp overlap
ChIP liver ERP002306.ONECUT1.liver 145 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 374 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 136 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 12 datasets
ChIP GM23338 ENCFF333SNB 261 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 395 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 395 bp overlap
ChIP OSvKM GSE81899.POU5F1.OSvKM 326 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 248 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 215 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 157 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 395 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 387 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 263 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
PRDM1 3 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
ChIP HEK293 ENCFF302TBP 108 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 395 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 154 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 167 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 201 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 117 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 94 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 110 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 149 bp overlap
RXRA 1 dataset
ChIP liver ENCFF077DAP 248 bp overlap
SATB1 1 dataset
Motif ES_0h ES_0h-SATB1_MA1963.2 7 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 197 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 181 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 189 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 151 bp overlap
SMARCA4 4 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 180 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 248 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 362 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 263 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 184 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 261 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 395 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 197 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 164 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 231 bp overlap
ChIP OSKM GSE81899.SOX2.OSKM 184 bp overlap
ChIP hESC GSE18292.SOX2.hESC 102 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 307 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap
STAT3 2 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 195 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 188 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TEAD1 2 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
TEAD2 2 datasets
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 7 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 188 bp overlap
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 224 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 219 bp overlap
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 66 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 317 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 357 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 395 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 160 bp overlap
TP63 1 dataset
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 164 bp overlap
TWIST1 4 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 278 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 140 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 143 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 278 bp overlap
Tfcp2l1 2 datasets
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Motif ES_0h ES_0h-Tfcp2l1_MA0145.2 14 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 232 bp overlap
YY1AP1 1 dataset
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 251 bp overlap
ZNF24 1 dataset
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF324 1 dataset
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 292 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 331 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 180 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 112 bp overlap
Zfp335 3 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap