chr3 : 141,074,501 141,074,972
471 bp 69 TFs 4 linked genes
This 471 bp open chromatin element is linked to 4 target genes and is bound by 69 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
SPSB4 23.3 kb Distal Multiome
SLC25A36 132.9 kb Distal Multiome
PXYLP1 157.2 kb Distal Multiome
ZBTB38 293.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:141,069,501 – 141,079,972
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 447 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 410 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 248 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 227 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 213 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 381 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 471 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 342 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 298 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 353 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 471 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 348 bp overlap
DMRTC2 1 dataset
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 111 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 175 bp overlap
EP300 1 dataset
ChIP H1 ENCFF927IYK 262 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 232 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 183 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 383 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 351 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 144 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 309 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 241 bp overlap
ChIP WTC11 ENCFF338WGC 401 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 311 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 281 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 260 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 216 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 288 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 349 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 408 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 422 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 136 bp overlap
MAX 2 datasets
ChIP WA01 ENCSR000EUP.MAX.WA01 170 bp overlap
ChIP WTC11 ENCFF223QFY 441 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 298 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 116 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 441 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 304 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 260 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 348 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 286 bp overlap
ChIP hESC GSE18292.NANOG.hESC 72 bp overlap
NIPBL 2 datasets
ChIP hESC GSE64758.NIPBL.hESC 237 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 192 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Nkx2-1 1 dataset
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 386 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 187 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 316 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 269 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 384 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 416 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 391 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 299 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 338 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 256 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 184 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF896IJG 295 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 286 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 145 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 221 bp overlap
SMAD2 1 dataset
ChIP hESC GSE29422.SMAD2.hESC 171 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 345 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 279 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 281 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 264 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 237 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 213 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 211 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 285 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 146 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 298 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 362 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 436 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 387 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 290 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 271 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 280 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 371 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 271 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 471 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 245 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 290 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 140 bp overlap
ChIP WTC11 ENCFF688PEU 369 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 236 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 229 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 135 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 283 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 358 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 300 bp overlap
TP53 4 datasets
ChIP H9 GSE142050.TP53.H9 199 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 252 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 99 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 266 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 245 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 333 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 314 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 326 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 348 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 295 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 281 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap