chr3 : 112,092,654 – 112,093,131
477 bp 89 TFs 1 linked gene
This 477 bp open chromatin element is linked to C3orf52 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
C3orf52 6.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:112,087,654 – 112,098,131
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 330 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 344 bp overlap
BCL11A 1 dataset
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 69 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 123 bp overlap
BRD4 7 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 234 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 146 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 232 bp overlap
ChIP OCI-AML3 GSE104745.BRD4.OCI-AML3 184 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 292 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 260 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 141 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 89 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 149 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 103 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 109 bp overlap
CEBPA 1 dataset
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 92 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 340 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 135 bp overlap
CREBBP 3 datasets
ChIP fibroblast_proliferating GSE106146.CREBBP.fibroblast_proliferating 195 bp overlap
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 385 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 349 bp overlap
CTCF 2 datasets
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 142 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 250 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 67 bp overlap
EBF1 2 datasets
ChIP NALM-6 GSE126300.EBF1.NALM-6 202 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 158 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 419 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 297 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 393 bp overlap
EP300 1 dataset
ChIP AML_shaml1-eto GSE131939.EP300.AML_shaml1-eto 104 bp overlap
ERG 2 datasets
ChIP SKNO-1 GSE23730.ERG.SKNO-1 240 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 206 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 358 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 210 bp overlap
ETV1 1 dataset
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 176 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 204 bp overlap
FLI1 2 datasets
ChIP SEM GSE117864.FLI1.SEM 209 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 91 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 435 bp overlap
FOXA1 1 dataset
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 310 bp overlap
FOXL2 2 datasets
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 160 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 355 bp overlap
FOXO1 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.FOXO1.B-cell_GERMINAL_CENTER 254 bp overlap
ChIP CD34 GSE80773.FOXO1.CD34 172 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 266 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 128 bp overlap
FOXP1 2 datasets
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 178 bp overlap
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 239 bp overlap
GATA2 2 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 344 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 300 bp overlap
GATA4 3 datasets
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 315 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 246 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 346 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 246 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 255 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 307 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 434 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 341 bp overlap
GRHL2 1 dataset
ChIP OVCA429 GSE71018.GRHL2.OVCA429 130 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 104 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 202 bp overlap
HMGB2 1 dataset
ChIP IMR-90_proliferating GSE98245.HMGB2.IMR-90_proliferating 329 bp overlap
IKZF1 5 datasets
ChIP BCR-ABL1 GSE58825.IKZF1.BCR-ABL1 258 bp overlap
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 343 bp overlap
ChIP GM12878 ENCFF753XDO 381 bp overlap
ChIP GM12878 ENCFF824TGK 315 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 449 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCFF918AID 335 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 258 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 452 bp overlap
IRF2 2 datasets
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 72 bp overlap
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 68 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 180 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 311 bp overlap
KDM1A 1 dataset
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 141 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 109 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 70 bp overlap
KMT2A 2 datasets
ChIP L826 GSE83671.KMT2A.L826 332 bp overlap
ChIP OCI-AML-3_VTP GSE129636.KMT2A.OCI-AML-3_VTP 210 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 258 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 235 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 268 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 187 bp overlap
LYL1 3 datasets
ChIP Kasumi-1 GSE63484.LYL1.Kasumi-1 159 bp overlap
ChIP THP-1 GSE63484.LYL1.THP-1 219 bp overlap
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 137 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 216 bp overlap
MED1 2 datasets
ChIP hMSC-TERT4_D0 GSE104537.MED1.hMSC-TERT4_D0 168 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 245 bp overlap
MEF2B 2 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 322 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 360 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 214 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 238 bp overlap
MYB 5 datasets
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 189 bp overlap
ChIP DU528 GSE94000.MYB.DU528 350 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 361 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 221 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 224 bp overlap
MYCN 2 datasets
ChIP RH4 GSE83726.MYCN.RH4 211 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 87 bp overlap
MYOD1 6 datasets
ChIP RD GSE137168.MYOD1.RD 410 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 220 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 477 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 183 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 244 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 196 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 260 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 338 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 291 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 256 bp overlap
NR3C1 4 datasets
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 303 bp overlap
ChIP NALM-6 GSE67046.NR3C1.NALM-6 258 bp overlap
ChIP NALM-6_CASP1 GSE67046.NR3C1.NALM-6_CASP1 179 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 312 bp overlap
PAX5 3 datasets
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 112 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 477 bp overlap
ChIP NALM-6 GSE115764.PAX5.NALM-6 346 bp overlap
POLR2A 4 datasets
ChIP thyroid gland ENCFF979LRR 307 bp overlap
ChIP transverse colon ENCFF193UMS 195 bp overlap
ChIP transverse colon ENCFF607LKE 175 bp overlap
ChIP transverse colon ENCFF610RWV 167 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 76 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 269 bp overlap
RAD21 2 datasets
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 324 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 340 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 221 bp overlap
RBPJ 1 dataset
ChIP LCL GSE75503.RBPJ.LCL 272 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 306 bp overlap
RUNX1 9 datasets
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 366 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 173 bp overlap
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 399 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 278 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 278 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 298 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 203 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 260 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 107 bp overlap
RUNX1T1 3 datasets
ChIP Kasumi-1 GSE65427.RUNX1T1.Kasumi-1 162 bp overlap
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 280 bp overlap
ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 162 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 353 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 415 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 403 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 247 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 178 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 255 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 254 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 121 bp overlap
SPI1 2 datasets
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 151 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 126 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 222 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 124 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 226 bp overlap
TBX5 8 datasets
ChIP G296S GSE85628.TBX5.G296S 364 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 364 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 209 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 304 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 304 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 453 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 297 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 247 bp overlap
TCF12 3 datasets
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 131 bp overlap
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 209 bp overlap
ChIP ME-1 GSE46044.TCF12.ME-1 213 bp overlap
TCF3 4 datasets
ChIP 697_HF GSE138031.TCF3.697_HF 203 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 104 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 304 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 267 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 179 bp overlap
TEAD1 2 datasets
ChIP adipocyte GSE140782.TEAD1.adipocyte 245 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 138 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 102 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 214 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 149 bp overlap
ZKSCAN2 1 dataset
ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 434 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 91 bp overlap
ZNF677 1 dataset
ChIP HEK293 ENCFF220HCQ 140 bp overlap
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