chr3 : 65,018,861 – 65,019,276
415 bp 81 TFs 0 linked genes
This 415 bp open chromatin element has no linked target genes and is bound by 81 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:65,013,861 – 65,024,276
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 229 bp overlap
AR 2 datasets
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 215 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 130 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 415 bp overlap
ChIP K562 ENCFF938UXQ 399 bp overlap
ATF3 3 datasets
ChIP K-562 ENCSR028UIU.ATF3.K-562 322 bp overlap
ChIP liver ENCFF375GID 411 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 324 bp overlap
BRD2 6 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 415 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801 175 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801_rDNA 175 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 415 bp overlap
ChIP MDA-MB-231_NTsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_NTsiRNA_JQ1 353 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD2.SUM159PT_DMSO 415 bp overlap
BRD4 13 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 270 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 270 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 316 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 415 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 415 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 316 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 270 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 270 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 56 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 354 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 215 bp overlap
ChIP SUM159PT_DMSO_72h GSE87418.BRD4.SUM159PT_DMSO_72h 112 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 415 bp overlap
BRD9 2 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD9.MDA-MB-231_JQ1 409 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 415 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 398 bp overlap
ChIP K562 ENCFF963TXY 274 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 415 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 399 bp overlap
ChIP K562 ENCFF673OEZ 402 bp overlap
CCNT2 2 datasets
ChIP K-562 ENCSR000DOA.CCNT2.K-562 166 bp overlap
ChIP K562 ENCFF199GSZ 368 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 194 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 301 bp overlap
EGR1 1 dataset
ChIP liver ENCSR736BUG.EGR1.liver 155 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 251 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 265 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE76893.ESR1.MCF-7 198 bp overlap
FOS 1 dataset
ChIP K-562 ENCSR000DKB.FOS.K-562 116 bp overlap
FOSL1 2 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 358 bp overlap
ChIP K562 ENCFF455MKD 415 bp overlap
FOXA1 12 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 176 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 91 bp overlap
ChIP HepG2 ENCFF207NVJ 217 bp overlap
ChIP HepG2 ENCFF740VZW 213 bp overlap
ChIP K562 ENCFF954GIJ 210 bp overlap
ChIP K562 ENCFF954GIJ 329 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 130 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 307 bp overlap
ChIP liver ENCFF749ERP 259 bp overlap
ChIP liver ERP002306.FOXA1.liver 178 bp overlap
ChIP liver ENCSR735KEY.FOXA1.liver 175 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 415 bp overlap
FOXA2 11 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 101 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 285 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 265 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 262 bp overlap
ChIP DE DE-FOXA2-1 415 bp overlap
ChIP DE DE-FOXA2-2 415 bp overlap
ChIP HepG2 ENCFF533COJ 262 bp overlap
ChIP liver ENCFF877SFI 262 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 243 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 188 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 415 bp overlap
FOXA3 1 dataset
ChIP K562 ENCFF781VSC 266 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 400 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 235 bp overlap
GATA2 3 datasets
ChIP K-562 ENCSR000BKM.GATA2.K-562 196 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP SK-N-SH ENCFF764OZD 128 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 415 bp overlap
ChIP DE DE-GATA4-2 415 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 242 bp overlap
ChIP foregut GSE117136.GATA4.foregut 415 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 415 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 415 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 329 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 363 bp overlap
ChIP DE DE-GATA6-1 415 bp overlap
ChIP DE DE-GATA6-2 415 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 415 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 415 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 340 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 415 bp overlap
ChIP H9 ERP004206.GATA6.H9 197 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 415 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 415 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 374 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 368 bp overlap
ChIP foregut GSE117136.GATA6.foregut 340 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 415 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 415 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 415 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 252 bp overlap
HDAC1 4 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 323 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 325 bp overlap
ChIP K562 ENCFF928TKZ 220 bp overlap
ChIP K562 ENCFF968WBH 227 bp overlap
HDAC2 5 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 408 bp overlap
ChIP K-562 ENCSR000BMG.HDAC2.K-562 306 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 366 bp overlap
ChIP K562 ENCFF744ALD 262 bp overlap
ChIP K562 ENCFF919OMP 415 bp overlap
HNF4A 5 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 228 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 266 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 192 bp overlap
ChIP liver ENCFF354NRH 332 bp overlap
ChIP liver ERP002306.HNF4A.liver 289 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 415 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 373 bp overlap
ChIP K562 ENCFF348IBL 230 bp overlap
ChIP K562 ENCFF771OHZ 415 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 231 bp overlap
JUND 4 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 224 bp overlap
ChIP K562 ENCFF336RCR 387 bp overlap
ChIP liver ENCFF007WWT 373 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 337 bp overlap
KDM1A 10 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 380 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 365 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 355 bp overlap
ChIP K-562 ENCSR000ATX.KDM1A.K-562 246 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 211 bp overlap
ChIP K562 ENCFF128TYE 322 bp overlap
ChIP K562 ENCFF133OLU 324 bp overlap
ChIP K562 ENCFF934ZRG 415 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 275 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 286 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 415 bp overlap
MAX 2 datasets
ChIP liver ENCFF584QGB 357 bp overlap
ChIP liver ENCSR521IID.MAX.liver 358 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR000EFX.MAZ.K-562 155 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 287 bp overlap
ChIP K562 ENCFF320GSD 150 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR113LAS.MTA2.K-562 346 bp overlap
MYC 2 datasets
ChIP K-562 ENCSR000EGS.MYC.K-562 127 bp overlap
ChIP LNCaP GSE117430.MYC.LNCaP 174 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 167 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 358 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 326 bp overlap
ChIP K562 ENCFF788MPU 251 bp overlap
ChIP K562 ENCFF866HRM 252 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 301 bp overlap
ChIP K562 ENCFF167YID 348 bp overlap
NR2F1 2 datasets
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 415 bp overlap
ChIP K562 ENCFF221HJH 170 bp overlap
NR2F2 3 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 285 bp overlap
ChIP K562 ENCFF004YPK 158 bp overlap
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 197 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 282 bp overlap
ChIP K562 ENCFF674RQA 412 bp overlap
NR3C1 2 datasets
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 148 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 170 bp overlap
ONECUT1 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 278 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 58 bp overlap
PAXIP1 1 dataset
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 229 bp overlap
PDX1 4 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 214 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 173 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 313 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 154 bp overlap
PPARG 2 datasets
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 415 bp overlap
ChIP HepG2 ENCFF329FBJ 371 bp overlap
RAD21 1 dataset
ChIP liver ENCFF485PAC 320 bp overlap
RCOR1 2 datasets
ChIP K-562 ENCSR000EGC.RCOR1.K-562 159 bp overlap
ChIP K562 ENCFF216EEJ 297 bp overlap
REST 3 datasets
ChIP liver ENCFF240FWT 325 bp overlap
ChIP liver ENCFF240FWT 246 bp overlap
ChIP liver ENCSR867WPH.REST.liver 334 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 182 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 366 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 293 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 415 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 303 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 358 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 384 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 321 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 123 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 197 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 415 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 415 bp overlap
ChIP K562 ENCFF316MCJ 415 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 212 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 228 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 355 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 229 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 371 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 371 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 345 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 375 bp overlap
STAT5A 2 datasets
ChIP K-562 ENCSR000BRR.STAT5A.K-562 183 bp overlap
ChIP K562 ENCFF226BTJ 341 bp overlap
TAL1 11 datasets
ChIP K-562 ENCSR106FRG.TAL1.K-562 378 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 403 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 303 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 226 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 167 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 347 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 223 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 337 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 306 bp overlap
ChIP K562 ENCFF620GMX 178 bp overlap
ChIP K562 ENCFF661CCK 276 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 362 bp overlap
ChIP K562 ENCFF931DJY 257 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 363 bp overlap
ChIP K562 ENCFF319QZT 360 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 138 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 359 bp overlap
TRIM24 2 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 248 bp overlap
ChIP K562 ENCFF616RIL 415 bp overlap
YY1 2 datasets
ChIP liver ENCFF400MBC 280 bp overlap
ChIP liver ENCFF400MBC 381 bp overlap
ZBTB33 2 datasets
ChIP liver ENCFF592BJA 393 bp overlap
ChIP liver ENCSR516HUP.ZBTB33.liver 317 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 301 bp overlap
ChIP K562 ENCFF795CMH 415 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR695EQB.ZNF24.K-562 285 bp overlap
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