chr3 : 56,874,031 56,874,571
540 bp 83 TFs 3 linked genes
This 540 bp open chromatin element is linked to TASOR, ARHGEF3, and IL17RD and is bound by 83 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
TASOR 191.2 kb Distal Multiome
ARHGEF3 204.9 kb Distal Multiome
IL17RD 290.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:56,869,031 – 56,879,571
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
BCL11A 2 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 59 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 261 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 202 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 197 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 296 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 307 bp overlap
ChIP K562 ENCFF673OEZ 333 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 281 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 296 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 141 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 223 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 278 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 206 bp overlap
DPRX 2 datasets
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 540 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 274 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 370 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 193 bp overlap
ESRRA 1 dataset
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 141 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 92 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 169 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 233 bp overlap
ChIP DE DE-FOXA2-1 540 bp overlap
ChIP DE DE-FOXA2-2 540 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 295 bp overlap
ChIP SK-N-SH ENCFF124KVL 94 bp overlap
GATA1 11 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 126 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 258 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 250 bp overlap
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 112 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 340 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 263 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 442 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 262 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 235 bp overlap
GATA2 15 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 479 bp overlap
ChIP CD34_DMSO GSE60792.GATA2.CD34_DMSO 310 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 338 bp overlap
ChIP K562 ENCFF830LLA 467 bp overlap
ChIP ME-1 GSE46044.GATA2.ME-1 238 bp overlap
ChIP SH-SY5Y ENCFF485YIB 320 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 540 bp overlap
ChIP SK-N-SH ENCFF764OZD 321 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 540 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 331 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 172 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 176 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 487 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 194 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 174 bp overlap
GATA3 12 datasets
ChIP BE2C GSE65664.GATA3.BE2C 221 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 226 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 327 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 249 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 136 bp overlap
ChIP SH-SY5Y ENCFF475HYF 373 bp overlap
ChIP SH-SY5Y ENCFF475HYF 170 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 540 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 181 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 241 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 243 bp overlap
ChIP SK-N-SH ENCFF040SSB 262 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 540 bp overlap
ChIP DE DE-GATA4-2 540 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 540 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 184 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 385 bp overlap
ChIP DE DE-GATA6-1 540 bp overlap
ChIP DE DE-GATA6-2 540 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 517 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 540 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 469 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 540 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 540 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 540 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 540 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 540 bp overlap
ChIP foregut GSE117136.GATA6.foregut 296 bp overlap
GFI1B 6 datasets
ChIP CD34 GSE52924.GFI1B.CD34 272 bp overlap
ChIP K-562 ENCSR509GDT.GFI1B.K-562 182 bp overlap
ChIP SET-2 GSE121424.GFI1B.SET-2 361 bp overlap
ChIP SET-2_GSK GSE121424.GFI1B.SET-2_GSK 333 bp overlap
ChIP SET-2_GSK_insR GSE121424.GFI1B.SET-2_GSK_insR 375 bp overlap
ChIP SET-2_insR GSE121424.GFI1B.SET-2_insR 309 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 296 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 341 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 372 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 258 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 414 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 293 bp overlap
ChIP K562 ENCFF968WBH 389 bp overlap
HSF1 4 datasets
Motif DE_48h DE_48h-HSF1_MA0486.2 13 bp overlap
Motif DE_60h DE_60h-HSF1_MA0486.2 13 bp overlap
ChIP MO91 GSE45852.HSF1.MO91 308 bp overlap
ChIP MO91_27A_20UM GSE45852.HSF1.MO91_27A_20UM 191 bp overlap
HSF2 2 datasets
Motif DE_48h DE_48h-HSF2_MA0770.1 13 bp overlap
Motif DE_60h DE_60h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_48h DE_48h-HSF4_MA0771.1 13 bp overlap
Motif DE_60h DE_60h-HSF4_MA0771.1 13 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 371 bp overlap
ChIP SK-N-SH ENCFF285GEQ 94 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 540 bp overlap
KDM1A 4 datasets
ChIP K-562 GSE117944.KDM1A.K-562 282 bp overlap
ChIP SET-2 GSE121424.KDM1A.SET-2 196 bp overlap
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 226 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 479 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 298 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 298 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 285 bp overlap
LYL1 1 dataset
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 247 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 253 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 278 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 128 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 447 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 300 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 444 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 316 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 404 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 325 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 200 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 204 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 540 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 317 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 316 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 129 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 366 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 310 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 292 bp overlap
Nr5A2 1 dataset
Motif DE_48h DE_48h-Nr5A2_MA0505.3 9 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 449 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 163 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 272 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 540 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 204 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 126 bp overlap
RCOR1 3 datasets
ChIP SK-N-SH ENCFF518EXB 252 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 94 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 411 bp overlap
RNF2 1 dataset
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 326 bp overlap
RUNX1 5 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 208 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 208 bp overlap
ChIP CD34_ADULT GSE70660.RUNX1.CD34_ADULT 241 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 352 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 352 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 475 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 531 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 460 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 485 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 247 bp overlap
SMARCA4 4 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 336 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 221 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 213 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 214 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 229 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 540 bp overlap
STAT1 1 dataset
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 203 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 262 bp overlap
TAL1 13 datasets
ChIP CD34 GSE52924.TAL1.CD34 295 bp overlap
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 369 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 303 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 260 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 165 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 138 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 192 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 231 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 214 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 144 bp overlap
ChIP ME-1 GSE46044.TAL1.ME-1 215 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 324 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 300 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 381 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 357 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 185 bp overlap
ChIP SK-N-SH ENCFF147AHB 352 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 223 bp overlap
ChIP SK-N-SH ENCFF270OWF 275 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 211 bp overlap
TEAD1 1 dataset
ChIP K562 ENCFF465AQA 297 bp overlap
TEAD4 5 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 274 bp overlap
ChIP K562 ENCFF673NIK 327 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 274 bp overlap
ChIP SK-N-SH ENCFF754TJT 256 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 227 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 322 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 232 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 226 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 235 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 202 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 202 bp overlap
ZBTB12 2 datasets
Motif DE_48h DE_48h-ZBTB12_MA1649.2 7 bp overlap
Motif DE_60h DE_60h-ZBTB12_MA1649.2 7 bp overlap
ZBTB26 1 dataset
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 70 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 206 bp overlap
ZNF214 1 dataset
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap