chr3 : 36,965,264 36,965,767
503 bp 89 TFs 5 linked genes
This 503 bp open chromatin element is linked to 5 target genes and is bound by 89 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
TRANK1 20.7 kb Distal Multiome
EPM2AIP1 27.5 kb Distal Multiome
MLH1 27.9 kb Distal Multiome
LRRFIP2 210.8 kb Distal Multiome
GOLGA4 277.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:36,960,264 – 36,970,767
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 319 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 429 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 465 bp overlap
ATF2 1 dataset
ChIP H1 ENCFF295GZO 449 bp overlap
ATF7 1 dataset
ChIP MCF-7 ENCFF578WKB 315 bp overlap
BCL11A 3 datasets
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
ChIP H1 ENCFF833IPY 145 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCFF867SAS 325 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCFF969VBY 262 bp overlap
CTCF 5 datasets
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 355 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP thyroid gland ENCFF204HWS 214 bp overlap
ChIP upper lobe of left lung ENCFF277NLT 186 bp overlap
CUX1 1 dataset
ChIP MCF-7 ENCFF779ATB 233 bp overlap
DMRTA1 1 dataset
Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 2 datasets
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
DPF2 1 dataset
ChIP MCF-7 ENCFF712EXQ 218 bp overlap
Dux 2 datasets
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
E2F1 2 datasets
ChIP MCF-7 ENCFF692OYJ 471 bp overlap
ChIP MCF-7 ENCFF692OYJ 271 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif ES_0h ES_0h-EOMES_MA0800.2 9 bp overlap
EP300 3 datasets
ChIP MCF-7 ENCFF508OAU 249 bp overlap
ChIP upper lobe of left lung ENCFF024QBJ 249 bp overlap
ChIP upper lobe of left lung ENCFF720RAR 241 bp overlap
EZH2 1 dataset
ChIP hepatocyte ENCFF118DKH 130 bp overlap
FERD3L 2 datasets
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
Motif ES_0h ES_0h-FERD3L_MA1485.1 14 bp overlap
GATA3 6 datasets
ChIP MCF-7 ENCFF178GBS 340 bp overlap
ChIP MCF-7 ENCFF178GBS 141 bp overlap
ChIP MCF-7 ENCFF352QVM 328 bp overlap
ChIP MCF-7 ENCFF437NQS 254 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 194 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 125 bp overlap
GATAD2B 1 dataset
ChIP MCF-7 ENCFF718AXM 283 bp overlap
GFI1 1 dataset
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GRHL2 5 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
ChIP HBE GSE46194.GRHL2.HBE 199 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 140 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 188 bp overlap
Gfi1B 1 dataset
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
Gli1 1 dataset
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif ES_0h ES_0h-Gli2_MA0734.4 9 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCFF881POI 295 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP MCF-7 ENCFF450KFZ 335 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MGA 2 datasets
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif ES_0h ES_0h-MGA_MA0801.1 8 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCFF179YRV 151 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 2 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 191 bp overlap
NEUROD1 1 dataset
ChIP MCF-7 ENCFF232JNU 308 bp overlap
NFYA 2 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
NFYB 2 datasets
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif ES_0h ES_0h-NFYB_MA0502.3 9 bp overlap
NFYC 2 datasets
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap
NKX2-1 2 datasets
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 143 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 149 bp overlap
NKX2-2 2 datasets
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap
NR1I3 1 dataset
Motif ES_0h ES_0h-NR1I3_MA1534.2 8 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PBX1 2 datasets
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
Motif ES_0h ES_0h-PBX1_MA0070.2 9 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 57 bp overlap
ChIP MCF-7 ENCFF116OCS 343 bp overlap
PKNOX2 2 datasets
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Motif ES_0h ES_0h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 3 datasets
ChIP thyroid gland ENCFF979LRR 322 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 330 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 334 bp overlap
PRDM1 1 dataset
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
RAD51 1 dataset
ChIP MCF-7 ENCFF128SEB 282 bp overlap
RARA 2 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 191 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 141 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 176 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 125 bp overlap
RCOR1 1 dataset
ChIP MCF-7 ENCFF833PNP 302 bp overlap
RXRG 1 dataset
Motif ES_0h ES_0h-RXRG_MA1556.1 14 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF896IJG 266 bp overlap
ChIP MCF-7 ENCFF521RDC 325 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SMARCE1 1 dataset
ChIP MCF-7 ENCFF890MHF 76 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 82 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 219 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
Motif ES_0h ES_0h-SREBF1_MA0829.3 10 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
Motif ES_0h ES_0h-SREBF2_MA0828.3 10 bp overlap
Six4 2 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Stat6 1 dataset
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TBX1 2 datasets
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif ES_0h ES_0h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif ES_0h ES_0h-TBX15_MA0803.1 8 bp overlap
TBX20 2 datasets
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
Motif ES_0h ES_0h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif ES_0h ES_0h-TBX21_MA0690.3 10 bp overlap
TBX5 2 datasets
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
ChIP MCF-7 ENCFF329MRX 321 bp overlap
TEAD4 7 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP HCT116 ENCFF526YYD 277 bp overlap
ChIP HCT116 ENCFF526YYD 86 bp overlap
ChIP Ishikawa ENCFF772OTG 297 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 107 bp overlap
ChIP MCF-7 ENCFF710WPA 291 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 146 bp overlap
TFAP4 2 datasets
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Motif ES_0h ES_0h-TFAP4_MA0691.1 10 bp overlap
TFCP2 2 datasets
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
Motif ES_0h ES_0h-TFCP2_MA1968.2 9 bp overlap
TGIF1 2 datasets
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
Motif ES_0h ES_0h-TGIF1_MA0796.1 12 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 93 bp overlap
ChIP HCT116 ENCFF330PYP 353 bp overlap
ChIP Ishikawa ENCFF728IEG 261 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 221 bp overlap
Vdr 1 dataset
Motif ES_0h ES_0h-Vdr_MA0693.4 7 bp overlap
ZBTB7B 2 datasets
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
Motif ES_0h ES_0h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 2 datasets
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
Motif ES_0h ES_0h-ZBTB7C_MA0695.2 8 bp overlap
ZIM3 2 datasets
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF135 1 dataset
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF16 2 datasets
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF217 2 datasets
ChIP MCF-7 ENCFF379OSU 178 bp overlap
ChIP MCF-7 ENCFF432NXE 348 bp overlap
ZNF507 1 dataset
ChIP MCF-7 ENCFF080XWY 331 bp overlap
ZNF558 2 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF579 1 dataset
ChIP MCF-7 ENCFF550XRS 437 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF85 3 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap