chr2 : 182,522,550 – 182,522,884
334 bp 75 TFs 1 linked gene
This 334 bp open chromatin element is linked to PDE1A and is bound by 75 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PDE1A at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:182,517,550 – 182,527,884
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 145 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 334 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 193 bp overlap
BRD4 8 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 334 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 104 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 334 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 334 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 334 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 209 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 233 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 270 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 54 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 207 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 217 bp overlap
CTCF 2 datasets
ChIP HAP1 GSE152721.CTCF.HAP1 72 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 334 bp overlap
EP300 2 datasets
ChIP AML GSE131939.EP300.AML 105 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 334 bp overlap
ERG 18 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 159 bp overlap
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 102 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 146 bp overlap
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 155 bp overlap
ChIP aortic-endothelial-cell_D13 GSE139377.ERG.aortic-endothelial-cell_D13 145 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 129 bp overlap
ChIP aortic-endothelial-cell_D19 GSE139377.ERG.aortic-endothelial-cell_D19 116 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 105 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 133 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 217 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 125 bp overlap
ChIP aortic-endothelial-cell_D4 GSE139377.ERG.aortic-endothelial-cell_D4 143 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 145 bp overlap
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 191 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 157 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 163 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 130 bp overlap
ChIP arterial-endothelial-cells GSE128382.ERG.arterial-endothelial-cells 132 bp overlap
ETS1 4 datasets
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 283 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 304 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 283 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 220 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 206 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 79 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 161 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 205 bp overlap
FOXA1 3 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 118 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 164 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 106 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 143 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 280 bp overlap
GATA2 3 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 147 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 265 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 60 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 195 bp overlap
HDAC1 1 dataset
ChIP AML GSE131939.HDAC1.AML 207 bp overlap
HOXB13 1 dataset
ChIP 22Rv1 GSE96652.HOXB13.22Rv1 292 bp overlap
KDM1A 3 datasets
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 175 bp overlap
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 266 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 87 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 86 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 290 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 302 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 260 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 334 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 213 bp overlap
MAX 3 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 198 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 334 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 334 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 283 bp overlap
MECOM 1 dataset
ChIP SKH1 GSE102697.MECOM.SKH1 158 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 57 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 305 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 318 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 334 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 205 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 284 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 252 bp overlap
NEUROG2 6 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 334 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 334 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 334 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 272 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 291 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 259 bp overlap
NR3C1 10 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 217 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 244 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 137 bp overlap
ChIP IMR-90 ERP007093.NR3C1.IMR-90 213 bp overlap
ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 153 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 334 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 129 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 257 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 246 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 285 bp overlap
OLIG2 3 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 324 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 334 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 334 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 334 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 334 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 306 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 199 bp overlap
PGR 1 dataset
ChIP HUVEC-C_PR_PROGESTERON GSE43786.PGR.HUVEC-C_PR_PROGESTERON 233 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 198 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 129 bp overlap
POLR2A 3 datasets
ChIP neural cell ENCFF604SPB 209 bp overlap
ChIP neural cell ENCFF604SPB 294 bp overlap
ChIP spleen ENCFF044PYR 147 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 195 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 332 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 287 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 180 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 293 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 297 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 280 bp overlap
RELA 11 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 107 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 132 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 115 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 115 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 123 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 169 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 107 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 130 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 104 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 157 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 110 bp overlap
RUNX1 4 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 157 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 157 bp overlap
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 231 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 285 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE43834.RUNX1T1.Kasumi-1 188 bp overlap
ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 74 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 188 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 334 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 334 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 216 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 218 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 133 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 334 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 201 bp overlap
SPI1 2 datasets
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 269 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 207 bp overlap
TAL1 1 dataset
ChIP RPMI8402 GSE39179.TAL1.RPMI8402 166 bp overlap
TCF12 1 dataset
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 218 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 334 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 274 bp overlap
TEAD1 1 dataset
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 306 bp overlap
TEAD4 2 datasets
ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 187 bp overlap
ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 191 bp overlap
TFAP4 1 dataset
ChIP Kasumi-1 GSE45738.TFAP4.Kasumi-1 277 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF582MWI 319 bp overlap
ChIP HEK293 ENCFF582MWI 334 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 157 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 182 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 211 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 240 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 140 bp overlap
ZNF322 1 dataset
ChIP HEK293 GSE76494.ZNF322.HEK293 218 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 196 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 167 bp overlap
ZSCAN21 2 datasets
ChIP HEK293 ENCFF582WUP 334 bp overlap
ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 275 bp overlap
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