chr1 : 44,316,195 44,316,964
769 bp 103 TFs 3 linked genes
This 769 bp open chromatin element is linked to ERI3, RNF220, and DMAP1 and is bound by 103 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
ERI3 38.7 kb Distal Multiome
RNF220 88.7 kb Distal Multiome
DMAP1 103.0 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:44,311,195 – 44,321,964
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 325 bp overlap
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 143 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 200 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 231 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 285 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 585 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 530 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF956TPS 511 bp overlap
CTCF 1 dataset
ChIP HT-1080 GSE135580.CTCF.HT-1080 290 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP GM12878 ENCFF167CZS 321 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 182 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 141 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 508 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 674 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 465 bp overlap
EP300 3 datasets
ChIP Kasumi-1 GSE115115.EP300.Kasumi-1 200 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 482 bp overlap
ChIP neural cell ENCFF442QNK 517 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 327 bp overlap
ESR1 2 datasets
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 211 bp overlap
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 203 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 374 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 181 bp overlap
ChIP HEK293 ENCFF528YED 379 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 326 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 280 bp overlap
FOXA1 10 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 628 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 654 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 681 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 535 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 624 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 490 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 571 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 430 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 316 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 432 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 290 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 595 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 619 bp overlap
ChIP DE DE-FOXA2-1 759 bp overlap
ChIP DE DE-FOXA2-2 748 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 321 bp overlap
GATA1 4 datasets
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 116 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 360 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 295 bp overlap
GATA2 8 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 212 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 371 bp overlap
ChIP K562 ENCFF830LLA 577 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 221 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 624 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 227 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 441 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 244 bp overlap
GATA3 4 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 328 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 271 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 200 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 190 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 340 bp overlap
ChIP DE DE-GATA4-1 769 bp overlap
ChIP DE DE-GATA4-2 769 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 226 bp overlap
ChIP foregut GSE117136.GATA4.foregut 403 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 648 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 713 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 769 bp overlap
ChIP DE DE-GATA6-2 769 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 740 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 761 bp overlap
ChIP foregut GSE117136.GATA6.foregut 317 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 351 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 594 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 548 bp overlap
GFI1B 1 dataset
ChIP HEK293 ENCFF264FBS 325 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 163 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 389 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 203 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 245 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 333 bp overlap
ChIP K562 ENCFF055GAZ 487 bp overlap
ChIP K562 ENCFF317JJX 482 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 582 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 199 bp overlap
ChIP GM12878 ENCFF824TGK 526 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 501 bp overlap
ChIP GM12878 ENCFF918AID 462 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 315 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 472 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 439 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 280 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 153 bp overlap
KDM1A 4 datasets
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 92 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 54 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 109 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 396 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 458 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 235 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 402 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 165 bp overlap
MED1 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 159 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 468 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 307 bp overlap
MYB 3 datasets
ChIP CD4_TH2 GSE72266.MYB.CD4_TH2 188 bp overlap
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 175 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 360 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 260 bp overlap
ChIP D283-Med GSE92582.NEUROD1.D283-Med 419 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 568 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 278 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 316 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 174 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 267 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 459 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 172 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 554 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 534 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 206 bp overlap
OVOL3 2 datasets
ChIP HEK293 ENCFF898STB 357 bp overlap
ChIP HEK293 ENCSR768LIO.OVOL3.HEK293 267 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 222 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 421 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 385 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 367 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 348 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 411 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 217 bp overlap
RELA 5 datasets
ChIP GM12878 ENCSR000EAG.RELA.GM12878 228 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 279 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 168 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 231 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 168 bp overlap
RELB 3 datasets
ChIP GM12878 ENCFF217ADF 549 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 300 bp overlap
ChIP L1236 GSE63736.RELB.L1236 112 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 203 bp overlap
RNF2 1 dataset
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 224 bp overlap
RUNX1 2 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 321 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 321 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 223 bp overlap
ChIP Kasumi-1_shTAF1-AE GSE115115.RUNX1T1.Kasumi-1_shTAF1-AE 282 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 371 bp overlap
Rfx6 1 dataset
Motif DE_72h DE_72h-Rfx6_MA1724.2 9 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 252 bp overlap
SMAD1 1 dataset
ChIP CD34_PROG_BMP GSE29194.SMAD1.CD34_PROG_BMP 125 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 388 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 229 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 769 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 677 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 731 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA4 1 dataset
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 193 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 623 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 678 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 259 bp overlap
ChIP K562 ENCFF059YCJ 437 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 327 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 583 bp overlap
SPI1 2 datasets
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 102 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 294 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 206 bp overlap
TAL1 2 datasets
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 188 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 386 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 197 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 399 bp overlap
TSHZ1 1 dataset
ChIP HEK293 ENCSR217WRC.TSHZ1.HEK293 199 bp overlap
Tfcp2l1 1 dataset
Motif DE_72h DE_72h-Tfcp2l1_MA0145.2 14 bp overlap
ZBTB26 1 dataset
ChIP HEK293 GSE76494.ZBTB26.HEK293 144 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 391 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 311 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 202 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 213 bp overlap
ZBTB7A 2 datasets
ChIP K-562 GSE103445.ZBTB7A.K-562 203 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 103 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 235 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 170 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 441 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 233 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 164 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 139 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 441 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 246 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 397 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 256 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 321 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 177 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 501 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 445 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 268 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 238 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 616 bp overlap