chr2 : 96,817,953 – 96,818,186
233 bp 68 TFs 3 linked genes
This 233 bp open chromatin element is linked to CNNM3, ENSG00000289135, and CNNM3-DT and is bound by 68 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CNNM3 1.7 kb Proximal Proximity
ENSG00000289135 1.9 kb Proximal Proximity
CNNM3-DT 4.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:96,812,953 – 96,823,186
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 233 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 51 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 227 bp overlap
BCL11A 1 dataset
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 66 bp overlap
CBFA2T3 3 datasets
ChIP K-562 GSE142227.CBFA2T3.K-562 141 bp overlap
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 188 bp overlap
ChIP K562 ENCFF673OEZ 233 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 125 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 125 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 55 bp overlap
DMAP1 1 dataset
ChIP HepG2 ENCFF247MSU 128 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 89 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 202 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 152 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 233 bp overlap
ChIP DE DE-FOXA2-2 129 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 199 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 172 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 228 bp overlap
GATA2 3 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 170 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 161 bp overlap
ChIP K562 ENCFF544PCK 219 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 233 bp overlap
ChIP DE DE-GATA4-2 233 bp overlap
ChIP foregut GSE117136.GATA4.foregut 233 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 233 bp overlap
GATA6 14 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 159 bp overlap
ChIP DE DE-GATA6-1 233 bp overlap
ChIP DE DE-GATA6-2 233 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 233 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 220 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 233 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 233 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 212 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 233 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 163 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 233 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 203 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 233 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 197 bp overlap
GZF1 1 dataset
ChIP HepG2 ENCFF060TLH 100 bp overlap
HDAC1 3 datasets
ChIP HepG2 ENCFF750ZWM 233 bp overlap
ChIP K-562 ENCSR387UWP.HDAC1.K-562 179 bp overlap
ChIP K562 ENCFF968WBH 233 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 233 bp overlap
ChIP K562 ENCFF744ALD 233 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 233 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 184 bp overlap
IKZF5 1 dataset
ChIP HepG2 ENCFF641EBK 73 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 67 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 121 bp overlap
KAT7 1 dataset
ChIP HepG2 ENCFF613PTN 213 bp overlap
KDM1A 3 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 220 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 98 bp overlap
ChIP K562 ENCFF128TYE 226 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 206 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 148 bp overlap
MAFK 3 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 124 bp overlap
ChIP HepG2 ENCFF767LDG 210 bp overlap
ChIP K562 ENCFF380WHM 218 bp overlap
MAX 1 dataset
ChIP HepG2 ENCFF507HCX 114 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 161 bp overlap
MEIS1 1 dataset
ChIP HepG2 ENCFF706DID 146 bp overlap
MEN1 2 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 201 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 171 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 233 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 75 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGS.MYC.K-562 152 bp overlap
NCOA1 1 dataset
ChIP HepG2 ENCFF624JES 212 bp overlap
NCOR1 1 dataset
ChIP HepG2 ENCFF685NAH 50 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 137 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 129 bp overlap
NRF1 4 datasets
ChIP K-562 ENCSR837EYC.NRF1.K-562 131 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 111 bp overlap
ChIP K562 ENCFF130SGK 233 bp overlap
ChIP K562 ENCFF689EWI 233 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 206 bp overlap
ChIP K562 ENCFF236IUS 233 bp overlap
PLSCR1 1 dataset
ChIP HepG2 ENCFF693TEO 142 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 225 bp overlap
PTRF 1 dataset
ChIP K-562 ENCSR126FZN.PTRF.K-562 214 bp overlap
RBBP5 1 dataset
ChIP K-562 ENCSR000AQI.RBBP5.K-562 71 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 223 bp overlap
REST 1 dataset
ChIP A-549 ENCSR000BQP.REST.A-549 72 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 233 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 78 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 233 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 214 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 233 bp overlap
TAL1 4 datasets
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 113 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 99 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 146 bp overlap
ChIP K562 ENCFF661CCK 196 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 152 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 229 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 225 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 113 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 198 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 131 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 220 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 200 bp overlap
ZFP90 1 dataset
ChIP HepG2 ENCFF409XXV 231 bp overlap
ZFP91 1 dataset
ChIP HepG2 ENCFF012CME 67 bp overlap
ZNF138 3 datasets
ChIP HepG2 ENCFF770NCL 63 bp overlap
ChIP HepG2 ENCFF770NCL 233 bp overlap
ChIP HepG2 ENCFF770NCL 69 bp overlap
ZNF263 1 dataset
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 123 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 163 bp overlap
ZNF501 2 datasets
ChIP HepG2 ENCFF879XZR 73 bp overlap
ChIP HepG2 ENCFF879XZR 233 bp overlap
ZNF564 1 dataset
ChIP HepG2 ENCFF364ZIM 129 bp overlap
ZNF740 1 dataset
ChIP K562 ENCFF505NFV 81 bp overlap
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