chr2 : 38,277,670 38,278,397
727 bp 96 TFs 3 linked genes
This 727 bp open chromatin element is linked to GAPDHP25, ATL2, and CYP1B1 and is bound by 96 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
GAPDHP25 7.0 kb Proximal Proximity
ATL2 99.2 kb Distal Multiome
CYP1B1 201.9 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:38,272,670 – 38,283,397
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 167 bp overlap
ATF7,NPFF 1 dataset
ChIP HepG2 ENCFF068SVI 517 bp overlap
Arid3a 2 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BACH1 1 dataset
ChIP H1 ENCFF282VDB 321 bp overlap
BARX2 2 datasets
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
BCL11A 1 dataset
ChIP H1 ENCFF833IPY 145 bp overlap
BRD4 3 datasets
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 113 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 184 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 113 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 305 bp overlap
CTBP1 2 datasets
ChIP HEK293T ENCFF003PDY 111 bp overlap
ChIP HEK293T ENCSR237TFX.CTBP1.HEK293T 75 bp overlap
Crx 2 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
DUX4 1 dataset
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP Ishikawa ENCFF364ZWT 417 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 441 bp overlap
ChIP HEK293 ENCFF528YED 417 bp overlap
FOXA1 6 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 332 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 198 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 327 bp overlap
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP HepG2 ENCFF361KNY 285 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
FOXA2 7 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 318 bp overlap
ChIP DE DE-FOXA2-1 727 bp overlap
ChIP DE DE-FOXA2-2 727 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF570ABM 405 bp overlap
ChIP HepG2 ENCFF894AYY 184 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 314 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 142 bp overlap
FOXP1 1 dataset
ChIP HepG2 ENCFF823ERM 341 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 727 bp overlap
ChIP DE DE-GATA4-2 727 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 727 bp overlap
ChIP DE DE-GATA6-2 727 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 383 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 263 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 364 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 455 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 365 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 155 bp overlap
GSC 2 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP HepG2 ENCFF990GUQ 445 bp overlap
HNF1A 2 datasets
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
ChIP HepG2 ENCFF352VYI 411 bp overlap
HNF1B 4 datasets
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 308 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 328 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 322 bp overlap
HOXC13 1 dataset
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
Isl1 2 datasets
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 487 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 663 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 408 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 606 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 297 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 86 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCFF159QSW 437 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCFF658MHR 425 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 363 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 391 bp overlap
MAF 2 datasets
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
Motif ES_0h ES_0h-MAF_MA1520.2 13 bp overlap
MAF::NFE2 2 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap
MAFA 2 datasets
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
Motif ES_0h ES_0h-MAFA_MA1521.2 13 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 4 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
ChIP H1 ENCFF854XWE 285 bp overlap
ChIP HepG2 ENCFF767LDG 257 bp overlap
MAX 4 datasets
ChIP A549 ENCFF310XGQ 525 bp overlap
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WTC11 ENCFF223QFY 554 bp overlap
ChIP WTC11 ENCFF223QFY 339 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Mafg 2 datasets
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 262 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 122 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 243 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 209 bp overlap
ChIP hESC GSE18292.NANOG.hESC 104 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCFF029AAD 381 bp overlap
NR4A1 1 dataset
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR5A2 1 dataset
ChIP A549 ENCFF834RVE 455 bp overlap
Nfe2l2 2 datasets
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
Nr2e1 1 dataset
Motif ES_0h ES_0h-Nr2e1_MA0676.1 9 bp overlap
Nr5A2 2 datasets
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap
OTX1 2 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 63 bp overlap
PAX3 2 datasets
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
Motif ES_0h ES_0h-PAX3_MA0780.1 10 bp overlap
PAXIP1 1 dataset
ChIP HepG2 ENCFF526NOJ 510 bp overlap
PITX1 3 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
ChIP HepG2 ENCFF468QTQ 471 bp overlap
PITX2 2 datasets
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
Motif ES_0h ES_0h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 554 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 515 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 171 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 481 bp overlap
Pax7 2 datasets
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Motif ES_0h ES_0h-Pax7_MA0680.3 10 bp overlap
RAD51 2 datasets
ChIP GM12878 ENCFF916JXQ 319 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 201 bp overlap
RHOXF1 2 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SIX4 2 datasets
ChIP HepG2 ENCFF372NPG 341 bp overlap
ChIP WTC11 ENCFF891HYW 377 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 281 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 349 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 477 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 529 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 727 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 380 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 58 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 101 bp overlap
SOX12 1 dataset
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 221 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 129 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 550 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 501 bp overlap
SPI1 3 datasets
ChIP K-562 ENCSR000BGW.SPI1.K-562 102 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 130 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCFF467DDW 471 bp overlap
TEAD1 1 dataset
ChIP HepG2 ENCFF661PNM 377 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 371 bp overlap
TEAD4 3 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP WTC11 ENCFF114TZS 341 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 132 bp overlap
USF2 1 dataset
ChIP GM12878 GSE97661.USF2.GM12878 151 bp overlap
WT1 1 dataset
ChIP HEK293 ENCFF906HIR 331 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 213 bp overlap
ZBTB17 2 datasets
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
Motif ES_0h ES_0h-ZBTB17_MA2102.1 8 bp overlap
ZMYM4 1 dataset
ChIP HepG2 ENCFF567SQY 551 bp overlap
ZNF219 1 dataset
ChIP HepG2 ENCFF266JIR 431 bp overlap
ZNF644 1 dataset
ChIP HepG2 ENCFF352VGJ 337 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF687 3 datasets
ChIP GM12878 ENCFF233SGE 326 bp overlap
ChIP GM12878 ENCFF233SGE 457 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 144 bp overlap
ZNF707 1 dataset
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
ZNF766 2 datasets
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCFF241QRH 445 bp overlap