chrX : 13,693,408 13,693,568
160 bp 76 TFs 1 linked gene
This 160 bp open chromatin element is linked to RAB9A and is bound by 76 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RAB9A 4.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:13,688,408 – 13,698,568
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 144 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 123 bp overlap
ARID1A 3 datasets
ChIP 12Z GSE129781.ARID1A.12Z 126 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 160 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 126 bp overlap
ATF2 2 datasets
ChIP K-562 ENCSR869IUD.ATF2.K-562 112 bp overlap
ChIP K562 ENCFF139ZZG 160 bp overlap
ATF3 3 datasets
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 93 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 160 bp overlap
ChIP K562 ENCFF604FPV 107 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 136 bp overlap
ChIP K562 ENCFF674KTF 78 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 160 bp overlap
ChIP MCF-7 ENCFF578WKB 160 bp overlap
BRD4 3 datasets
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 57 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 160 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 160 bp overlap
CEBPA 5 datasets
ChIP MV4-11 GSE88746.CEBPA.MV4-11 160 bp overlap
ChIP T-47D GSE132649.CEBPA.T-47D 156 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 160 bp overlap
ChIP T-47D_siCEBPA GSE132649.CEBPA.T-47D_siCEBPA 145 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 160 bp overlap
CEBPB 12 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 83 bp overlap
ChIP H1 ENCFF871PTR 137 bp overlap
ChIP HCT-116 ENCSR000BSD.CEBPB.HCT-116 105 bp overlap
ChIP HeLa-S3 ENCFF722WEG 88 bp overlap
ChIP IMR-90 ENCFF468UGY 129 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 67 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 97 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 101 bp overlap
ChIP K562 ENCFF194QGF 140 bp overlap
ChIP MCF-7 ENCFF772ZTQ 156 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 100 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 80 bp overlap
CEBPG 1 dataset
ChIP K-562 ENCSR490LWA.CEBPG.K-562 160 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 160 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 160 bp overlap
CTCF 4 datasets
ChIP MCF-7 ENCFF414SZG 157 bp overlap
ChIP MCF-7 ENCFF424NQR 159 bp overlap
ChIP MCF-7 ENCFF844STM 159 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 90 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 72 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 160 bp overlap
ChIP BLaER1 ENCFF093OYK 160 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 160 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 135 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 142 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 141 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 160 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 160 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 121 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 158 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 160 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 160 bp overlap
FOXA1 1 dataset
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 159 bp overlap
GATA6 4 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 160 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 124 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 160 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 85 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 118 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 160 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 160 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 160 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 160 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 108 bp overlap
JUND 2 datasets
ChIP HCT116 ENCFF748ZQX 160 bp overlap
ChIP HeLa-S3 ENCFF642OHL 106 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 160 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 160 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 160 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 96 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 160 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 160 bp overlap
MAX 2 datasets
ChIP HCT116 ENCFF810LEN 160 bp overlap
ChIP HCT116 ENCFF810LEN 154 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 103 bp overlap
MED1 1 dataset
ChIP GM12878 GSE93080.MED1.GM12878 160 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 160 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 160 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 137 bp overlap
PGR 2 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 71 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 115 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 160 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 126 bp overlap
POLR2A 3 datasets
ChIP GM12878 ENCFF631ERR 160 bp overlap
ChIP GM18526 ENCFF599EPS 160 bp overlap
ChIP GM18951 ENCFF079KKO 160 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 104 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 76 bp overlap
RBPJ 2 datasets
ChIP MDA-MB-157 GSE116868.RBPJ.MDA-MB-157 151 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 126 bp overlap
RELA 4 datasets
ChIP 786-O GSE86092.RELA.786-O 120 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 126 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 53 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 160 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 126 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 160 bp overlap
SMAD3 1 dataset
ChIP HCC1954 GSE104760.SMAD3.HCC1954 140 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 143 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 160 bp overlap
SP2 1 dataset
ChIP HEK293 ENCSR807LQP.SP2.HEK293 110 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 160 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 160 bp overlap
SP7 1 dataset
ChIP HEK293 ENCFF733RBE 158 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 160 bp overlap
STAT3 3 datasets
ChIP BT-474 GSE152203.STAT3.BT-474 102 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 105 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 160 bp overlap
TEAD4 2 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 95 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 69 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 92 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 160 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 160 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 76 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 160 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCFF968PWB 148 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 160 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 148 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 160 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 151 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 122 bp overlap
ZNF565 1 dataset
ChIP HEK293T GSE78099.ZNF565.HEK293T 109 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 148 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 80 bp overlap