chrX : 6,228,707 6,229,116
409 bp 84 TFs 1 linked gene
This 409 bp open chromatin element is linked to NLGN4X and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NLGN4X 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:6,223,707 – 6,234,116
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AR 28 datasets
ChIP LNCaP GSE62492.AR.LNCaP 248 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 175 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 138 bp overlap
ChIP LNCaP-abl_DMSO GSE80238.AR.LNCaP-abl_DMSO 95 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 138 bp overlap
ChIP LNCaP_DHT GSE114266.AR.LNCaP_DHT 167 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 118 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 96 bp overlap
ChIP LNCaP_DHT24H GSE58428.AR.LNCaP_DHT24H 140 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 137 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 147 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 208 bp overlap
ChIP LNCaP_R1881_HOTAIR GSE61268.AR.LNCaP_R1881_HOTAIR 72 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 185 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 185 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 169 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 222 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 185 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 204 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 167 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 218 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 145 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 179 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 161 bp overlap
ChIP VCaP-LTAD_DHT_1nM GSE94577.AR.VCaP-LTAD_DHT_1nM 227 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 114 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 139 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 142 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 205 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 177 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 82 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 182 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 180 bp overlap
BRD4 2 datasets
ChIP DND41 GSE54379.BRD4.DND41 218 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 409 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 185 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 215 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
Dmbx1 1 dataset
Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 201 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap
EZH2 9 datasets
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 161 bp overlap
ChIP T98G GSE112240.EZH2.T98G 343 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 409 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 409 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 409 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 131 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 172 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 325 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 373 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 345 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
IRF7 2 datasets
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
Motif ES_0h ES_0h-IRF7_MA0772.2 13 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 168 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 285 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 346 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 250 bp overlap
ChIP H1 ENCFF914VQY 259 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 146 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 272 bp overlap
MEF2B 1 dataset
ChIP KARPAS422 GSE69558.MEF2B.KARPAS422 97 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 379 bp overlap
MYB 2 datasets
ChIP Loucy GSE94000.MYB.Loucy 208 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 291 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 236 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 396 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 396 bp overlap
NFKB2 2 datasets
Motif DE_12h DE_12h-NFKB2_MA0778.2 11 bp overlap
Motif ES_0h ES_0h-NFKB2_MA0778.2 11 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 89 bp overlap
PHOX2B 2 datasets
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 345 bp overlap
POLR2A 6 datasets
ChIP GM23338 ENCFF450WCS 227 bp overlap
ChIP GM23338 ENCFF450WCS 331 bp overlap
ChIP H1 ENCFF566JSR 409 bp overlap
ChIP H1 ENCFF566JSR 409 bp overlap
ChIP H1 ENCFF833NJP 294 bp overlap
ChIP neural cell ENCFF604SPB 323 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 189 bp overlap
POU5F1 4 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 265 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 277 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 177 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
Prdm5 2 datasets
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 154 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 302 bp overlap
RELA 3 datasets
ChIP BJAB GSE117250.RELA.BJAB 101 bp overlap
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 78 bp overlap
ChIP BJAB_4h-activation GSE117250.RELA.BJAB_4h-activation 74 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 357 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RUNX2 2 datasets
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 263 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 174 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 321 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 109 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 260 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 247 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 327 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 258 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 376 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 403 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 253 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 118 bp overlap
TBP 6 datasets
ChIP H1 ENCFF859IIO 337 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 326 bp overlap
ChIP hESC GSE122298.TBP.hESC 372 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 353 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 257 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 121 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 119 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 264 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 221 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF24 2 datasets
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF530 2 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZNF768 2 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap