chr20 : 56,750,435 56,750,924
489 bp 88 TFs 2 linked genes
This 489 bp open chromatin element is linked to TFAP2C and RTF2 and is bound by 88 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TFAP2C 121.3 kb Distal Multiome
RTF2 282.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:56,745,435 – 56,755,924
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 392 bp overlap
AR 3 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 292 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 173 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 145 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 365 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 239 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 163 bp overlap
BRD4 4 datasets
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 410 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 354 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 354 bp overlap
ChIP hESC GSE33281.BRD4.hESC 66 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 297 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 304 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 232 bp overlap
CREBBP_M768 2 datasets
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
ChIP NCI-H3396_ETOH GSE32349.CREBBP_M768.NCI-H3396_ETOH 160 bp overlap
DMRTA1 3 datasets
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_24h DE_24h-DMRTA1_MA1707.2 10 bp overlap
Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap
DUX4 4 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif DE_24h DE_24h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 237 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 263 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 489 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 61 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 323 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 268 bp overlap
ESR1 5 datasets
ChIP HCC1428_TLED GSE27300.ESR1.HCC1428_TLED 245 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 222 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 345 bp overlap
ChIP MCF-7_E2 GSE71276.ESR1.MCF-7_E2 177 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 442 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 489 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 380 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 204 bp overlap
ETV5::HOXA2 3 datasets
Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_24h DE_24h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_72h DE_72h-ETV5HOXA2_MA1948.2 12 bp overlap
EZH2 3 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 458 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 52 bp overlap
ChIP SK-N-MC ENCFF674XUJ 461 bp overlap
FIGLA 3 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 283 bp overlap
GFI1 3 datasets
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif DE_24h DE_24h-GFI1_MA0038.3 11 bp overlap
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
Gfi1B 3 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_24h DE_24h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HCFC1 1 dataset
ChIP Hep-G2 ENCSR529JYA.HCFC1.Hep-G2 116 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 257 bp overlap
HMBOX1 3 datasets
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_24h DE_24h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_72h DE_72h-HMBOX1_MA0895.2 7 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 327 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KDM5B 2 datasets
ChIP MCF-7 GSE46055.KDM5B.MCF-7 189 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 117 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 309 bp overlap
MAX 7 datasets
ChIP H1 ENCFF601FOM 261 bp overlap
ChIP H1 ENCFF914VQY 262 bp overlap
ChIP Ishikawa ENCFF064TDQ 340 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 164 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 65 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 235 bp overlap
ChIP WTC11 ENCFF223QFY 401 bp overlap
MED1 2 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 183 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 190 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 193 bp overlap
MYC 2 datasets
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 161 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 121 bp overlap
MYCN 1 dataset
ChIP BE2C GSE80151.MYCN.BE2C 185 bp overlap
MYOD1 5 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
Motif DE_24h DE_24h-MYOD1_MA0499.3 9 bp overlap
Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 248 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 147 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 314 bp overlap
NCOA3 1 dataset
ChIP NCI-H3396_E2 GSE32349.NCOA3.NCI-H3396_E2 318 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
NFYA 3 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif DE_24h DE_24h-NFYA_MA0060.4 8 bp overlap
Motif ES_0h ES_0h-NFYA_MA0060.4 8 bp overlap
NFYB 11 datasets
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
Motif DE_24h DE_24h-NFYB_MA0502.3 9 bp overlap
Motif DE_24h DE_24h-NFYB_MA0502.3 9 bp overlap
Motif DE_48h DE_48h-NFYB_MA0502.3 9 bp overlap
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
Motif ES_0h ES_0h-NFYB_MA0502.3 9 bp overlap
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 286 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 209 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 277 bp overlap
ChIP WTC11 ENCFF751ZTQ 178 bp overlap
NFYC 5 datasets
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Motif DE_24h DE_24h-NFYC_MA1644.2 7 bp overlap
Motif ES_0h ES_0h-NFYC_MA1644.2 7 bp overlap
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 198 bp overlap
ChIP HepG2 ENCFF836FYP 351 bp overlap
NOTCH1 2 datasets
ChIP HCC1599 GSE116871.NOTCH1.HCC1599 251 bp overlap
ChIP MDA-MB-157 GSE116868.NOTCH1.MDA-MB-157 303 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 362 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 185 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 141 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 368 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 390 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 239 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 224 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 294 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 186 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 177 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 272 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 288 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1618.2 9 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 188 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 340 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 244 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 255 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 472 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SIX1 3 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif DE_24h DE_24h-SIX1_MA1118.2 9 bp overlap
Motif DE_72h DE_72h-SIX1_MA1118.2 9 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 446 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 202 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 145 bp overlap
SNAI2 3 datasets
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
Motif DE_24h DE_24h-SNAI2_MA0745.3 8 bp overlap
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
SNAI3 3 datasets
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 335 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 284 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 152 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 301 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 294 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 306 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 182 bp overlap
Six4 3 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif DE_24h DE_24h-Six4_MA2001.2 7 bp overlap
Motif DE_72h DE_72h-Six4_MA2001.2 7 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 196 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 187 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 228 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 144 bp overlap
TWIST1 2 datasets
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 239 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 202 bp overlap
USF2 2 datasets
ChIP WA01 ENCSR000ECD.USF2.WA01 121 bp overlap
ChIP WTC11 ENCFF139JAW 329 bp overlap
VEZF1 3 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 282 bp overlap
ZEB1 4 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 266 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 105 bp overlap
ZNF675 3 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif DE_24h DE_24h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF684 2 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap