chr20 : 56,748,308 56,749,036
728 bp 90 TFs 2 linked genes
This 728 bp open chromatin element is linked to TFAP2C and RTF2 and is bound by 90 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TFAP2C 119.4 kb Distal Multiome
RTF2 280.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:56,743,308 – 56,754,036
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARID1A 6 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 134 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 381 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 211 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 318 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 136 bp overlap
ChIP MCF-7_estrogen GSE123284.ARID1A.MCF-7_estrogen 106 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 147 bp overlap
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 94 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 351 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 258 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 237 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 527 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 194 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 194 bp overlap
BRD4 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 213 bp overlap
CTBP1 2 datasets
ChIP MCF-7 ENCFF969VBY 92 bp overlap
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 256 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 326 bp overlap
DMRTA2 2 datasets
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
DPF2 2 datasets
ChIP MCF-7 ENCFF712EXQ 108 bp overlap
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 196 bp overlap
DPRX 2 datasets
Motif DE_24h DE_24h-DPRX_MA1480.2 9 bp overlap
Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap
DUXA 2 datasets
Motif DE_24h DE_24h-DUXA_MA0884.2 13 bp overlap
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
E2F1 2 datasets
ChIP MCF-7 ENCFF692OYJ 346 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 145 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 557 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 335 bp overlap
ESR1 4 datasets
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 267 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 50 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 52 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 92 bp overlap
ESRRA 2 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 109 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 88 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 179 bp overlap
EZH2 2 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 305 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 239 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP MCF-7 ENCFF282FWZ 111 bp overlap
FOXP1 3 datasets
ChIP Hep-G2 ENCSR029LBT.FOXP1.Hep-G2 245 bp overlap
ChIP HepG2 ENCFF717IHQ 314 bp overlap
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 251 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 158 bp overlap
GATA1 2 datasets
Motif DE_24h DE_24h-GATA1_MA0035.5 7 bp overlap
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
GATA1::TAL1 2 datasets
Motif DE_24h DE_24h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 375 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 257 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 373 bp overlap
ChIP DE DE-GATA6-2 548 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 584 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 632 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 676 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 471 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 698 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 703 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 436 bp overlap
GRHL1 2 datasets
ChIP MCF-7 GSE140185.GRHL1.MCF-7 295 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.GRHL1.MCF-7_ARID1A-KO 60 bp overlap
GRHL2 4 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 212 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 154 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 359 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 91 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 102 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 137 bp overlap
IRF4 1 dataset
Motif DE_24h DE_24h-IRF4_MA1419.2 14 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 597 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 467 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 694 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 476 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 728 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 213 bp overlap
MAX 1 dataset
ChIP MCF-7 ENCFF169IXS 75 bp overlap
MEF2B 2 datasets
Motif DE_24h DE_24h-MEF2B_MA0660.1 12 bp overlap
Motif DE_36h DE_36h-MEF2B_MA0660.1 12 bp overlap
MEF2C 2 datasets
Motif DE_24h DE_24h-MEF2C_MA0497.2 11 bp overlap
Motif DE_36h DE_36h-MEF2C_MA0497.2 11 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 64 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 91 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 505 bp overlap
NBN 1 dataset
ChIP HepG2 ENCFF781RIL 341 bp overlap
NFIB 1 dataset
ChIP MCF-7 ENCFF925CGH 308 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 60 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 208 bp overlap
OTX1 1 dataset
ChIP MCF-7 ENCFF645GYL 317 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 97 bp overlap
PAX3 2 datasets
Motif DE_24h DE_24h-PAX3_MA0780.1 10 bp overlap
Motif DE_36h DE_36h-PAX3_MA0780.1 10 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 379 bp overlap
PHOX2A 2 datasets
Motif DE_24h DE_24h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
Motif DE_24h DE_24h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 102 bp overlap
POU2F3 2 datasets
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 569 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 647 bp overlap
PROP1 2 datasets
Motif DE_24h DE_24h-PROP1_MA0715.1 11 bp overlap
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Pax7 2 datasets
Motif DE_24h DE_24h-Pax7_MA0680.3 10 bp overlap
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
RAD21 1 dataset
ChIP MCF-7 ENCFF694KOM 56 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 344 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 180 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 609 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 627 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 496 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 397 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 561 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 346 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 304 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 240 bp overlap
ChIP HCC1954 GSE104760.SMAD3.HCC1954 105 bp overlap
SMARCA4 8 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 215 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 275 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 326 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 424 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 68 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.SMARCA4.MCF-7_ARID1A-KO 99 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 55 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 475 bp overlap
SMARCB1 7 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 74 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 200 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 122 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 105 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 76 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 98 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 109 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 249 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 335 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 237 bp overlap
SNAI1 1 dataset
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 265 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 94 bp overlap
STAT3 3 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 219 bp overlap
ChIP MCF-7_jc5843 GSE126004.STAT3.MCF-7_jc5843 103 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 90 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 322 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 217 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX4 1 dataset
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 185 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 86 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 185 bp overlap
TSC22D1 1 dataset
ChIP MCF-7 ENCFF552PAC 220 bp overlap
TSC22D2 1 dataset
ChIP MCF-7 ENCFF588BUN 297 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 197 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 197 bp overlap
YY1AP1 6 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 91 bp overlap
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 58 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 93 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 296 bp overlap
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 136 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 146 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCFF299BWK 80 bp overlap
ZNF512B 1 dataset
ChIP MCF-7 ENCFF233IPF 282 bp overlap
ZNF549 2 datasets
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap