chr18 : 50,992,154 50,992,773
619 bp 86 TFs 4 linked genes
This 619 bp open chromatin element is linked to 4 target genes and is bound by 86 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
ELAC1 24.6 kb Distal Multiome
SMAD4 37.6 kb Distal Multiome
ME2 113.5 kb Distal Multiome
MEX3C 204.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:50,987,154 – 50,997,773
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
ASCL1 4 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 117 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 207 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 619 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 379 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 559 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 299 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 368 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 407 bp overlap
BRD4 6 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 619 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 619 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 619 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 213 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 360 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 347 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 250 bp overlap
CTCF 2 datasets
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 315 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 137 bp overlap
ELF1 1 dataset
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 494 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 218 bp overlap
Erg 1 dataset
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 496 bp overlap
ChIP DE DE-FOXA2-2 433 bp overlap
GABPA 1 dataset
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 229 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 475 bp overlap
ChIP DE DE-GATA4-2 534 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 282 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 489 bp overlap
ChIP DE DE-GATA6-2 504 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 531 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 425 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 527 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 557 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 489 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 549 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 438 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 237 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 380 bp overlap
Hnf1A 1 dataset
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 509 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 265 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 543 bp overlap
MAX 5 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 173 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 126 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 322 bp overlap
ChIP WTC11 ENCFF223QFY 461 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYC 2 datasets
ChIP H1 ENCFF794ZJT 265 bp overlap
ChIP WA01 ENCSR000EBY.MYC.WA01 222 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 280 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 179 bp overlap
MYOD1 2 datasets
ChIP myoblast GSE50413.MYOD1.myoblast 136 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 122 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 458 bp overlap
NEUROG2 6 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 373 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 176 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 335 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 348 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 207 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 355 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 397 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 487 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 180 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 266 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 107 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 619 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 291 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 545 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 535 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 583 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 334 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 206 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 519 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 481 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 314 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 222 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 335 bp overlap
TBP 3 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 125 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 110 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 212 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 285 bp overlap
TEAD1 3 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 188 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 3 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
ChIP HepG2 ENCFF054UUL 334 bp overlap
TEAD4 4 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 312 bp overlap
ChIP H1 ENCFF778PAX 120 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 215 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP HepG2 ENCFF807KYJ 201 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 220 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 417 bp overlap
YAP1 1 dataset
ChIP hiPSC GSE111930.YAP1.hiPSC 241 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 184 bp overlap
ZBTB7A 1 dataset
Motif ES_0h ES_0h-ZBTB7A_MA0750.3 9 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZIM3 2 datasets
ChIP HEK293 GSE76494.ZIM3.HEK293 254 bp overlap
ChIP HEK293T GSE78099.ZIM3.HEK293T 201 bp overlap
ZNF213 1 dataset
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 185 bp overlap
ZNF652 3 datasets
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 322 bp overlap
ChIP HepG2 ENCFF331VPZ 182 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap