chr14 : 60,652,399 – 60,652,671
272 bp 71 TFs 1 linked gene
This 272 bp open chromatin element is linked to SIX1 and is bound by 71 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SIX1 2.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:60,647,399 – 60,657,671
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 266 bp overlap
ARID1A 1 dataset
ChIP Hep-G2 GSE69566.ARID1A.Hep-G2 272 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 103 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 258 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 272 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 141 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 272 bp overlap
BRD4 3 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 213 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 233 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 107 bp overlap
CBX7 2 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 120 bp overlap
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 210 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 72 bp overlap
ChIP H1 ENCFF095JHA 272 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 196 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 83 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 272 bp overlap
CTCF 13 datasets
ChIP 22Rv1 ENCFF466OXN 272 bp overlap
ChIP 22Rv1 ENCFF466OXN 214 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 272 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 272 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 192 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 272 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 139 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 179 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 177 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 81 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 190 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 272 bp overlap
ChIP uterus ENCSR798NVH.CTCF.uterus 162 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 249 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 156 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 153 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 108 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 170 bp overlap
EZH2 22 datasets
ChIP GM23248 ENCFF404ZHM 192 bp overlap
ChIP GM23248 ENCFF404ZHM 272 bp overlap
ChIP GM23248 ENCFF404ZHM 272 bp overlap
ChIP GM23338 ENCFF613YON 272 bp overlap
ChIP GM23338 ENCFF886DXX 88 bp overlap
ChIP H1 ENCFF232NZA 272 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 272 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 272 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 189 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 210 bp overlap
ChIP astrocyte ENCFF365JTP 63 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 272 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 272 bp overlap
ChIP fibroblast of lung ENCFF479BAW 272 bp overlap
ChIP hepatocyte ENCFF118DKH 91 bp overlap
ChIP hepatocyte ENCFF552DZB 272 bp overlap
ChIP keratinocyte ENCFF070STK 261 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 199 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 219 bp overlap
ChIP neural cell ENCFF610EPB 240 bp overlap
ChIP neural progenitor cell ENCFF018MKA 272 bp overlap
ChIP neural progenitor cell ENCFF472NFV 272 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 272 bp overlap
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 208 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 143 bp overlap
GATA3 1 dataset
ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 72 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 112 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 272 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 168 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 272 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 212 bp overlap
HNRNPL 1 dataset
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 177 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 272 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 272 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 117 bp overlap
KMT2A 2 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 182 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 272 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 272 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 272 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 205 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 239 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 267 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94782.MYCN.Kelly 116 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 184 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 272 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 210 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 182 bp overlap
NRF1 1 dataset
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 163 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 270 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 272 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 272 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 200 bp overlap
ChIP sigmoid colon ENCFF725QFT 134 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 68 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 272 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 251 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 272 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 184 bp overlap
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 184 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF967OJF 199 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 144 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 270 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 143 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 272 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 77 bp overlap
SIN3A 2 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 147 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 214 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 89 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 64 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 272 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 210 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 51 bp overlap
SMARCC1 3 datasets
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 272 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 133 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 272 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 149 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 272 bp overlap
ChIP liver ENCFF597LFJ 272 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 272 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 179 bp overlap
SUZ12 7 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 272 bp overlap
ChIP H1 ENCFF881NFR 272 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 116 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 272 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 272 bp overlap
ChIP NT2/D1 ENCFF574SXS 272 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 272 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 140 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 231 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 272 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 155 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 221 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 233 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 272 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 153 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 272 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 272 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 195 bp overlap
ZEB2 1 dataset
ChIP liver GSE103048.ZEB2.liver 263 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 150 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 223 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 185 bp overlap
Huangfu Lab · Publications · Resources · Contact