chr13 : 90,918,678 90,919,705
1,027 bp 87 TFs 1 linked gene
This 1.0 kb open chromatin element is linked to LINC00410 and is bound by 87 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00410 6.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:90,913,678 – 90,924,705
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
Atoh1 1 dataset
Motif DE_36h DE_36h-Atoh1_MA1467.3 7 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 127 bp overlap
BCL11A 1 dataset
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 73 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 95 bp overlap
BRD4 4 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 326 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 93 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 453 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 92 bp overlap
CBX3 2 datasets
ChIP K562 ENCFF733JGD 261 bp overlap
ChIP K562 ENCFF733JGD 261 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 210 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 251 bp overlap
DDX5 1 dataset
ChIP BT-549 GSE112961.DDX5.BT-549 156 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 373 bp overlap
EP300 1 dataset
ChIP A-549 ENCSR000BPW.EP300.A-549 284 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 68 bp overlap
Ebf2 2 datasets
Motif DE_36h DE_36h-Ebf2_MA1604.2 9 bp overlap
Motif DE_60h DE_60h-Ebf2_MA1604.2 9 bp overlap
Ebf4 2 datasets
Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
FOS 1 dataset
ChIP leiomyoma_PT1063 GSE128230.FOS.leiomyoma_PT1063 65 bp overlap
FOSL2 4 datasets
ChIP A-549 ENCSR000BQO.FOSL2.A-549 180 bp overlap
ChIP LPS141 GSE111253.FOSL2.LPS141 135 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 193 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 278 bp overlap
FOXA1 3 datasets
ChIP A-549 ENCSR000BRD.FOXA1.A-549 279 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 278 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 232 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 793 bp overlap
ChIP DE DE-FOXA2-2 627 bp overlap
FOXE1 1 dataset
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
GATA2 1 dataset
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
GATA3 1 dataset
ChIP A-549 ENCSR000BTI.GATA3.A-549 160 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 686 bp overlap
ChIP DE DE-GATA4-2 687 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 594 bp overlap
ChIP DE DE-GATA6-2 684 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 356 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 426 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 324 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 633 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 492 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 430 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 426 bp overlap
GFI1 1 dataset
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 192 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 212 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 231 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 282 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 221 bp overlap
MAFF 1 dataset
ChIP K562 ENCFF071YKK 203 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 270 bp overlap
ChIP K562 ENCFF455EEO 259 bp overlap
MAFK 2 datasets
ChIP A549 ENCFF371EPR 191 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 134 bp overlap
MAX 1 dataset
ChIP A-549 ENCSR000BTJ.MAX.A-549 114 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 304 bp overlap
MYB 1 dataset
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
MYBL2 1 dataset
Motif DE_36h DE_36h-MYBL2_MA0777.1 15 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 233 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 529 bp overlap
NFE2 4 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 252 bp overlap
ChIP K-562 ENCSR000FCC.NFE2.K-562 111 bp overlap
ChIP K562 ENCFF047YKA 209 bp overlap
ChIP K562 ENCFF163BSI 199 bp overlap
NFE2L1 1 dataset
ChIP K562 ENCFF138UHK 202 bp overlap
NFE2L2 9 datasets
ChIP A-549 GSE113497.NFE2L2.A-549 252 bp overlap
ChIP A-549 ENCSR584GHV.NFE2L2.A-549 124 bp overlap
ChIP A-549 GSE141497.NFE2L2.A-549 157 bp overlap
ChIP A-549 GSE113497.NFE2L2.A-549 452 bp overlap
ChIP A549 ENCFF474YMB 164 bp overlap
ChIP Hep-G2 ENCSR488EES.NFE2L2.Hep-G2 130 bp overlap
ChIP HepG2 ENCFF178DRC 157 bp overlap
ChIP IMR-90 ENCFF059WEE 158 bp overlap
ChIP IMR-90 ENCSR197WGI.NFE2L2.IMR-90 146 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 156 bp overlap
NR2C1 1 dataset
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_36h DE_36h-NR2F1_MA0017.3 12 bp overlap
NR2F2 1 dataset
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 200 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 187 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 217 bp overlap
Nr1H2 1 dataset
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
RBPJ 1 dataset
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Rarb 1 dataset
Motif DE_36h DE_36h-Rarb_MA0858.1 17 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 283 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 295 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 624 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 464 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 270 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 446 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 566 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 604 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 248 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 273 bp overlap
SMARCA2 5 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 366 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 193 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 182 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 265 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 405 bp overlap
SMARCA4 15 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 179 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 138 bp overlap
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 301 bp overlap
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 286 bp overlap
ChIP A-549_AG15689 GSE132290.SMARCA4.A-549_AG15689 113 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 126 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 148 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 85 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 135 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 109 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 199 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 166 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 336 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 359 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 93 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 128 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 322 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 543 bp overlap
SP1 1 dataset
ChIP A-549 ENCSR000BPE.SP1.A-549 286 bp overlap
SPI1 1 dataset
ChIP NB4 GSE128834.SPI1.NB4 177 bp overlap
STAT3 1 dataset
ChIP SUM159PT GSE152203.STAT3.SUM159PT 191 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 430 bp overlap
TCF7L1 1 dataset
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
THRB 1 dataset
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
TRIM28 3 datasets
ChIP HEK293 ENCFF265CEM 357 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 182 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 181 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
ZNF121 1 dataset
ChIP K562 ENCFF314GND 361 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 211 bp overlap
ZNF35 1 dataset
Motif DE_36h DE_36h-ZNF35_MA2333.1 7 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 324 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF708 2 datasets
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 214 bp overlap
Zic1::Zic2 3 datasets
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 4 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Zic3 3 datasets
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap