chr13 : 24,931,823 – 24,932,053
230 bp 70 TFs 1 linked gene
This 230 bp open chromatin element is linked to CENPJ and is bound by 70 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CENPJ 9.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:24,926,823 – 24,937,053
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 127 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 147 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 130 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 140 bp overlap
ChIP K562 ENCFF938UXQ 196 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 230 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 161 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 89 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 93 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 189 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 176 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 181 bp overlap
BRD2 3 datasets
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 230 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 189 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD2.K-562_iBET-BD2-IFNG 75 bp overlap
BRD3 2 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 179 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 78 bp overlap
BRD4 10 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 162 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 220 bp overlap
ChIP K-562_DMSO GSE120715.BRD4.K-562_DMSO 142 bp overlap
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 116 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 184 bp overlap
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 178 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 78 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 198 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 230 bp overlap
ChIP hESC GSE33281.BRD4.hESC 139 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 54 bp overlap
CDK6 1 dataset
ChIP KB GSE52469.CDK6.KB 110 bp overlap
CTCF 3 datasets
ChIP GM23338 ENCFF531QOI 127 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 75 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 63 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 210 bp overlap
E2F4 1 dataset
ChIP K-562 ENCSR000EWL.E2F4.K-562 70 bp overlap
E2F6 4 datasets
ChIP H1 ENCFF785DWK 226 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 230 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 126 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 230 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 230 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 69 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 100 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 93 bp overlap
EZH1 1 dataset
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 92 bp overlap
EZH2 32 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 230 bp overlap
ChIP A673 ENCFF790MVL 230 bp overlap
ChIP A673 ENCFF955JRZ 230 bp overlap
ChIP A673 ENCFF955JRZ 230 bp overlap
ChIP A673 ENCFF955JRZ 86 bp overlap
ChIP GM23248 ENCFF404ZHM 156 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 230 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 50 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 163 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 87 bp overlap
ChIP astrocyte ENCFF365JTP 230 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 230 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 118 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 155 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 154 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 230 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 113 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 204 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 230 bp overlap
ChIP fibroblast of lung ENCFF479BAW 190 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 230 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 230 bp overlap
ChIP hepatocyte ENCFF552DZB 230 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 230 bp overlap
ChIP keratinocyte ENCFF070STK 90 bp overlap
ChIP keratinocyte ENCFF070STK 230 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 230 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 166 bp overlap
ChIP myotube ENCFF857GWB 230 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 230 bp overlap
ChIP neural progenitor cell ENCFF472NFV 230 bp overlap
ChIP neural progenitor cell ENCFF472NFV 223 bp overlap
EZH2_phosphoT487 3 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 230 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 187 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 230 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 147 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 117 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 230 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 184 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 167 bp overlap
GTF2F1 1 dataset
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 111 bp overlap
HDAC1 1 dataset
ChIP PC-3 GSE147455.HDAC1.PC-3 101 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 155 bp overlap
HNRNPLL 1 dataset
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 60 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 75 bp overlap
IKZF1 2 datasets
ChIP K562 ENCFF348IBL 230 bp overlap
ChIP K562 ENCFF771OHZ 230 bp overlap
IRF1 2 datasets
ChIP K-562 GSE129380.IRF1.K-562 187 bp overlap
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 189 bp overlap
IRF2 2 datasets
ChIP K-562 ENCSR376WCJ.IRF2.K-562 83 bp overlap
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 125 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 66 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 165 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 73 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 108 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 224 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR163IUV.MAZ.K-562 101 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 92 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 178 bp overlap
NELFE 2 datasets
ChIP K-562_HS GSE112379.NELFE.K-562_HS 102 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 142 bp overlap
NEUROD1 1 dataset
ChIP K-562 ENCSR986CDX.NEUROD1.K-562 88 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 94 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 230 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 164 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 165 bp overlap
ChIP K562 ENCFF648YPL 170 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 116 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 184 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 213 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 230 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 159 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 158 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 112 bp overlap
RNF2 4 datasets
ChIP K562 ENCFF653BQJ 190 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 230 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 230 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 230 bp overlap
RUNX1 3 datasets
ChIP AML GSE111821.RUNX1.AML 158 bp overlap
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 51 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 51 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 166 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 102 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 57 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 176 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 169 bp overlap
ChIP K562 ENCFF506JCB 230 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 190 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 144 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 110 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 118 bp overlap
SMARCE1 1 dataset
ChIP K562 ENCFF690CFF 189 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 173 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 144 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 230 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 230 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 66 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 230 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 227 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 182 bp overlap
TBP 2 datasets
ChIP K-562 GSE55306.TBP.K-562 51 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 183 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 230 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 230 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 130 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 230 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 61 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 166 bp overlap
ZBTB7A 3 datasets
ChIP K-562 GSE103445.ZBTB7A.K-562 178 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 169 bp overlap
ChIP K562 ENCFF579ZGM 134 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 123 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 230 bp overlap
ZNF644 1 dataset
ChIP K-562 ENCSR729HVR.ZNF644.K-562 86 bp overlap
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