chr12 : 130,053,665 – 130,053,899
234 bp 90 TFs 1 linked gene
This 234 bp open chromatin element is linked to LINC02418 and is bound by 90 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02418 8.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:130,048,665 – 130,058,899
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 234 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 177 bp overlap
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 58 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 126 bp overlap
Ahr::Arnt 1 dataset
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 192 bp overlap
BRD4 3 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 115 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 224 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 86 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 131 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 103 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 55 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 216 bp overlap
CREB1 1 dataset
ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 168 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 208 bp overlap
CTCF 5 datasets
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
ChIP MCF-7 ENCFF414SZG 114 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 234 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 234 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 75 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 234 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 187 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 123 bp overlap
DUX4 1 dataset
Motif DE_24h DE_24h-DUX4_MA0468.1 11 bp overlap
ELF1 1 dataset
ChIP MCF-7 ENCSR000BSS.ELF1.MCF-7 125 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 234 bp overlap
EP300 1 dataset
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 157 bp overlap
ERG 2 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 50 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 173 bp overlap
ESR1 12 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 166 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 108 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 173 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 103 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 207 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 202 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 217 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 186 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 141 bp overlap
ChIP MCF-7_vehicle_45min_H2 GSE99626.ESR1.MCF-7_vehicle_45min_H2 234 bp overlap
ChIP MCF-7_vehicle_4h GSE99626.ESR1.MCF-7_vehicle_4h 234 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 177 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 167 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_24h DE_24h-ETV5FOXO1_MA1947.2 10 bp overlap
EZH2 2 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 135 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 234 bp overlap
FEZF2 1 dataset
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 151 bp overlap
FOXA2 2 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 170 bp overlap
ChIP DE DE-FOXA2-1 234 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 220 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 234 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 128 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 234 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 128 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 234 bp overlap
HDAC1 2 datasets
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 123 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 234 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 193 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 234 bp overlap
KLF1 1 dataset
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF12 1 dataset
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
KLF13 1 dataset
Motif DE_24h DE_24h-KLF13_MA0657.2 17 bp overlap
KLF16 1 dataset
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF3 2 datasets
Motif DE_24h DE_24h-KLF3_MA1516.2 10 bp overlap
ChIP keratinocyte GSE140991.KLF3.keratinocyte 234 bp overlap
KLF4 3 datasets
ChIP MCF-7 ENCFF948KTQ 234 bp overlap
ChIP MCF-7 ENCFF948KTQ 234 bp overlap
ChIP PDAC GSE64557.KLF4.PDAC 234 bp overlap
KLF5 3 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
ChIP ESO-26 GSE132680.KLF5.ESO-26 234 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 221 bp overlap
KLF6 2 datasets
Motif DE_24h DE_24h-KLF6_MA1517.2 9 bp overlap
ChIP PDAC GSE64557.KLF6.PDAC 234 bp overlap
KLF7 1 dataset
Motif DE_24h DE_24h-KLF7_MA1959.2 8 bp overlap
KLF9 2 datasets
ChIP MCF-7 ENCFF618FCM 234 bp overlap
ChIP MCF-7 ENCSR125ZYC.KLF9.MCF-7 218 bp overlap
LIN54 1 dataset
Motif DE_24h DE_24h-LIN54_MA0619.2 7 bp overlap
MAX 3 datasets
ChIP HeLa-S3 ENCSR000ECN.MAX.HeLa-S3 161 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 162 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 134 bp overlap
MGA 1 dataset
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 156 bp overlap
MNT 1 dataset
ChIP MCF-7 ENCSR663ZZZ.MNT.MCF-7 233 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 234 bp overlap
MYC 2 datasets
ChIP MCF-7 ENCFF542NWJ 234 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 165 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 196 bp overlap
ChIP Kelly_res GSE115249.MYCN.Kelly_res 129 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 234 bp overlap
MYOD1 6 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 234 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 153 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 234 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 133 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 128 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 168 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 200 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 133 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 118 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 68 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 161 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 82 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 164 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 178 bp overlap
RAD21 3 datasets
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 179 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 149 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 154 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 199 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 234 bp overlap
RCOR1 1 dataset
ChIP HeLa-S3 ENCSR000ECM.RCOR1.HeLa-S3 173 bp overlap
RUNX1 1 dataset
ChIP AML_bone-marrow GSE111821.RUNX1.AML_bone-marrow 162 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 234 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 234 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 234 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 234 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 234 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 212 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 234 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 183 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 157 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 74 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 234 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 205 bp overlap
SMARCB1 7 datasets
ChIP HeLa-S3 ENCFF733PLR 234 bp overlap
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 234 bp overlap
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 234 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 234 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 226 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 174 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 234 bp overlap
SMARCC1 1 dataset
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 234 bp overlap
SMARCC2 1 dataset
ChIP HeLa-S3 ENCSR000EDL.SMARCC2.HeLa-S3 147 bp overlap
SMC3 6 datasets
ChIP HeLa GSE126990.SMC3.HeLa 188 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 188 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 188 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 157 bp overlap
ChIP HeLa-S3 ENCFF992MML 234 bp overlap
ChIP HeLa-S3 ENCSR000ECS.SMC3.HeLa-S3 169 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 131 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 234 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 234 bp overlap
SP3 1 dataset
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP9 1 dataset
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 234 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 165 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 133 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 224 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR887MXT.ZHX1.HeLa-S3 116 bp overlap
ZIC1 1 dataset
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
ZNF579 1 dataset
ChIP MCF-7 ENCSR018MQH.ZNF579.MCF-7 225 bp overlap
Zic1::Zic2 1 dataset
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
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