chr12 : 117,051,045 117,051,880
835 bp 103 TFs 4 linked genes
This 835 bp open chromatin element is linked to 4 target genes and is bound by 103 transcription factors.
Linked Genes
4 genes
Link type
Gene Expression Dist. to TSS Distance Link type
TESC 47.9 kb Distal Multiome+HiCAR
FBXO21 138.9 kb Distal Multiome
FBXW8 140.6 kb Distal Multiome
RNFT2 313.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:117,046,045 – 117,056,880
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ATF4 1 dataset
ChIP K562 ENCFF030XBX 158 bp overlap
BCL11A 11 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 95 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 121 bp overlap
ChIP CD34_Day7_15min GSE104676.BCL11A.CD34_Day7_15min 99 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 152 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 155 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 79 bp overlap
ChIP CD34_Day9_15min GSE104676.BCL11A.CD34_Day9_15min 53 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 110 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 135 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 91 bp overlap
ChIP HUDEP-2_BCL11A-ER-V5 GSE103445.BCL11A.HUDEP-2_BCL11A-ER-V5 170 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 305 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 541 bp overlap
BRD2 4 datasets
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 115 bp overlap
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 283 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 404 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD2.K-562_iBET-IFNG 264 bp overlap
BRD3 6 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 694 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 168 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 509 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 229 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 349 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 585 bp overlap
BRD4 11 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 811 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 133 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 621 bp overlap
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 72 bp overlap
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 244 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 182 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 552 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 835 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 835 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 136 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 380 bp overlap
CREB3 1 dataset
ChIP K-562 ENCSR093FKD.CREB3.K-562 352 bp overlap
CREB5 1 dataset
ChIP K-562 ENCSR935PEA.CREB5.K-562 139 bp overlap
Crx 3 datasets
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Dmbx1 3 datasets
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
EBF1 2 datasets
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 425 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 351 bp overlap
ESR1 13 datasets
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 126 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 148 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 147 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 123 bp overlap
ChIP MCF-7 ENCFF004AKH 169 bp overlap
ChIP MCF-7_E2 GSE108883.ESR1.MCF-7_E2 65 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 64 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 52 bp overlap
ChIP MCF-7_OBHS GSE133941.ESR1.MCF-7_OBHS 54 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 52 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 126 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.ESR1.MDA-MB-134-VI_FI 77 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 179 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 404 bp overlap
EZH2 1 dataset
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 211 bp overlap
Ebf4 2 datasets
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 551 bp overlap
ChIP DE DE-FOXA2-2 364 bp overlap
GATA1 11 datasets
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 57 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 85 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 195 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 124 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
ChIP erythroblast ENCFF867JAR 268 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 165 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 115 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 81 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 578 bp overlap
ChIP DE DE-GATA4-2 641 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 583 bp overlap
ChIP DE DE-GATA6-2 689 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 470 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 430 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 453 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 835 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 584 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 244 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 476 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 89 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 555 bp overlap
ChIP foregut GSE117136.GATA6.foregut 192 bp overlap
GSC 3 datasets
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 3 datasets
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR000DJZ.HDAC8.K-562 196 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 598 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 272 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 538 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 330 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 232 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 362 bp overlap
KLF6 1 dataset
ChIP K-562 ENCSR297CGF.KLF6.K-562 98 bp overlap
KMT2A 2 datasets
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 341 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 396 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 114 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 456 bp overlap
MEF2A 1 dataset
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 157 bp overlap
MEF2B 3 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 311 bp overlap
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 368 bp overlap
ChIP KARPAS422 GSE69558.MEF2B.KARPAS422 402 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 354 bp overlap
MGA 1 dataset
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 3 datasets
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR914NEI.MTA3.K-562 109 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 578 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 73 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 180 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 224 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 196 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 169 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF998LHF 184 bp overlap
OTX1 3 datasets
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 3 datasets
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
PAX5 1 dataset
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 64 bp overlap
PITX1 3 datasets
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 3 datasets
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 3 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POLR2A 2 datasets
ChIP adrenal gland ENCFF843OBJ 211 bp overlap
ChIP heart left ventricle ENCFF591JWH 277 bp overlap
POU2F1 3 datasets
Motif DE_48h DE_48h-POU2F1_MA0785.2 9 bp overlap
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
Motif DE_72h DE_72h-POU2F1_MA0785.2 9 bp overlap
POU3F4 3 datasets
Motif DE_48h DE_48h-POU3F4_MA0789.1 9 bp overlap
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
Motif DE_72h DE_72h-POU3F4_MA0789.1 9 bp overlap
POU5F1B 3 datasets
Motif DE_48h DE_48h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_60h DE_60h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_72h DE_72h-POU5F1B_MA0792.1 9 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
RBPJ 3 datasets
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 835 bp overlap
REST 1 dataset
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 98 bp overlap
RHOXF1 3 datasets
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
Rarb 3 datasets
Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap
Motif DE_60h DE_60h-Rarb_MA0857.1 16 bp overlap
Motif DE_72h DE_72h-Rarb_MA0857.1 16 bp overlap
SHOX2 1 dataset
ChIP K-562 ENCSR184IQF.SHOX2.K-562 225 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 159 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 156 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 231 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 835 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 626 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 408 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 402 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 376 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 533 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 571 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 226 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 207 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 249 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 134 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 182 bp overlap
SNAI1 1 dataset
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SND1 2 datasets
ChIP NHEK GSE29498.SND1.NHEK 111 bp overlap
ChIP NHEK GSE29498.SND1.NHEK 558 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 428 bp overlap
SRF 1 dataset
Motif DE_72h DE_72h-SRF_MA0083.3 16 bp overlap
STAG1 1 dataset
ChIP CHRF28811 ERP008568.STAG1.CHRF28811 243 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 348 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 315 bp overlap
Stat5b 1 dataset
Motif DE_72h DE_72h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 352 bp overlap
TAL1 4 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 413 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 238 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 255 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 155 bp overlap
TBX18 1 dataset
ChIP K-562 ENCSR385IUC.TBX18.K-562 207 bp overlap
TBX4 1 dataset
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 3 datasets
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 561 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 249 bp overlap
TCF12 1 dataset
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
TCF3 4 datasets
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
ChIP K-562 ENCSR970OJY.TCF3.K-562 52 bp overlap
ChIP K-562 ENCSR970OJY.TCF3.K-562 187 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
TCF4 1 dataset
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 71 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 120 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 59 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 113 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR887MXT.ZHX1.HeLa-S3 65 bp overlap
ZNF215 2 datasets
ChIP K-562 ENCSR699RWG.ZNF215.K-562 256 bp overlap
ChIP K562 ENCFF317MOH 233 bp overlap
ZNF583 1 dataset
ChIP K562 ENCFF879KXH 236 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 335 bp overlap
ZNF768 1 dataset
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap