chr12 : 114,405,110 114,405,841
731 bp 90 TFs 3 linked genes
This 731 bp open chromatin element is linked to TBX5-AS1, LHX5-AS1, and LHX5 and is bound by 90 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
TBX5-AS1 3.1 kb Proximal Proximity
LHX5-AS1 926.8 kb Distal Multiome+HiCAR
LHX5 933.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:114,400,110 – 114,410,841
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 208 bp overlap
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 337 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 316 bp overlap
ARID1B 1 dataset
ChIP MCF-7_shJUN GSE128445.ARID1B.MCF-7_shJUN 294 bp overlap
ARID2 2 datasets
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 152 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 204 bp overlap
ASH2L 2 datasets
ChIP WA01 ENCSR850KIP.ASH2L.WA01 110 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 250 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 299 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 731 bp overlap
BRD4 12 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 245 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 138 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 628 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 410 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 201 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 731 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 701 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 731 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 731 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 359 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 194 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 731 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 265 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 501 bp overlap
ChIP H1 ENCFF095JHA 204 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 192 bp overlap
CHD1 5 datasets
ChIP H1 ENCFF998XEK 207 bp overlap
ChIP IMR-90 ENCFF921SVK 454 bp overlap
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 698 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 731 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 270 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 353 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 259 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 330 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 551 bp overlap
CTCF 7 datasets
ChIP 22Rv1 ENCFF466OXN 681 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 533 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 491 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 481 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 369 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 272 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 123 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 193 bp overlap
EED 2 datasets
ChIP ProEs GSE59087.EED.ProEs 117 bp overlap
ChIP ProEs GSE59087.EED.ProEs 255 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 221 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 222 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 219 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 394 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 254 bp overlap
EZH2 48 datasets
ChIP A673 ENCFF790MVL 659 bp overlap
ChIP A673 ENCFF790MVL 659 bp overlap
ChIP A673 ENCFF790MVL 143 bp overlap
ChIP A673 ENCFF955JRZ 623 bp overlap
ChIP A673 ENCFF955JRZ 90 bp overlap
ChIP GM23248 ENCFF506FWX 358 bp overlap
ChIP GM23338 ENCFF613YON 731 bp overlap
ChIP GM23338 ENCFF886DXX 731 bp overlap
ChIP H1 ENCFF232NZA 731 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 731 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 693 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 731 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 380 bp overlap
ChIP HepG2 ENCFF912EIW 448 bp overlap
ChIP HepG2 ENCFF912EIW 434 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 236 bp overlap
ChIP PC-3 ENCFF855OUB 517 bp overlap
ChIP ProEs GSE59087.EZH2.ProEs 265 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 731 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 731 bp overlap
ChIP SK-N-MC ENCFF434OHW 520 bp overlap
ChIP SK-N-MC ENCFF674XUJ 520 bp overlap
ChIP SK-N-MC ENCFF674XUJ 319 bp overlap
ChIP T98G GSE112240.EZH2.T98G 731 bp overlap
ChIP astrocyte ENCFF365JTP 506 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 178 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 112 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 669 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 352 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 308 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 731 bp overlap
ChIP hESC GSE113817.EZH2.hESC 708 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 279 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF552DZB 731 bp overlap
ChIP keratinocyte ENCFF070STK 421 bp overlap
ChIP keratinocyte ENCFF070STK 218 bp overlap
ChIP keratinocyte ENCFF070STK 209 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 208 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 180 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 471 bp overlap
ChIP neural cell ENCFF610EPB 157 bp overlap
ChIP neural cell ENCFF610EPB 250 bp overlap
ChIP neural progenitor cell ENCFF018MKA 731 bp overlap
ChIP neural progenitor cell ENCFF472NFV 731 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 561 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 649 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 441 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 378 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 471 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 206 bp overlap
GATA4 1 dataset
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 92 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 271 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 443 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 496 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 220 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 559 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 580 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 533 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 74 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 323 bp overlap
KDM5B 2 datasets
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 221 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 106 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 174 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 262 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 373 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 541 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 594 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 225 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 217 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 674 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 183 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 124 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 270 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 244 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 450 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 336 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 356 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 322 bp overlap
POLR2A 1 dataset
ChIP heart left ventricle ENCFF591JWH 217 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 566 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 281 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 293 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 731 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 731 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 490 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 689 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 731 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 428 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 731 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 50 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 439 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 503 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE76181.RUNX1.Jurkat 246 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 198 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 350 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 153 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 267 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 618 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 606 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 511 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 621 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 429 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 450 bp overlap
SMARCA4 4 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 266 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 731 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 220 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 183 bp overlap
SMC1 4 datasets
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 254 bp overlap
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 186 bp overlap
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 187 bp overlap
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 425 bp overlap
SOX2 1 dataset
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 124 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 182 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 319 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 287 bp overlap
STAT3 3 datasets
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 196 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 254 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 257 bp overlap
SUZ12 16 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 604 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 253 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 187 bp overlap
ChIP H1 ENCFF881NFR 731 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 56 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 212 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 185 bp overlap
ChIP K562 ENCFF397TBJ 445 bp overlap
ChIP K562 ENCFF397TBJ 338 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 671 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 449 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 155 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 731 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 731 bp overlap
ChIP NT2/D1 ENCFF574SXS 731 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 566 bp overlap
TBX5 4 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 159 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 336 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 336 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 286 bp overlap
TCF12 4 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP H1 ENCFF203EBH 220 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 129 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 166 bp overlap
TEAD4 2 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 190 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 490 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 731 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 371 bp overlap
TRIM28 2 datasets
ChIP HCT-116 GSE72622.TRIM28.HCT-116 521 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 171 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 355 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 559 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 731 bp overlap
ZBTB5 1 dataset
ChIP K-562 ENCSR389PWB.ZBTB5.K-562 256 bp overlap
ZFX 2 datasets
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 731 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 260 bp overlap
ZFY 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFY.HEK293T_22Rv1 459 bp overlap
ZNF711 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZNF711.HEK293T_22Rv1 654 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 120 bp overlap