chr11 : 127,461,211 127,462,468
1,257 bp 106 TFs 0 linked genes
This 1.3 kb open chromatin element has no linked target genes and is bound by 106 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:127,456,211 – 127,467,468
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
106 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 180 bp overlap
BARX1 1 dataset
Motif DE_72h DE_72h-BARX1_MA0875.2 6 bp overlap
BRD4 6 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 690 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 298 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 91 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 194 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 711 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 198 bp overlap
BSX 1 dataset
Motif DE_72h DE_72h-BSX_MA0876.2 6 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 268 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 450 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 142 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 592 bp overlap
DLX1 1 dataset
Motif DE_72h DE_72h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_72h DE_72h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_72h DE_72h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_72h DE_72h-Dlx4_MA0881.2 6 bp overlap
EN2 1 dataset
Motif DE_72h DE_72h-EN2_MA0642.3 7 bp overlap
EOMES 3 datasets
ChIP hESC GSE26097.EOMES.hESC 225 bp overlap
ChIP hESC GSE26097.EOMES.hESC 136 bp overlap
ChIP hESC GSE26097.EOMES.hESC 246 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 605 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 446 bp overlap
EZH2 4 datasets
ChIP PC-9 ENCSR793USK.EZH2.PC-9 611 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 306 bp overlap
ChIP neural progenitor cell ENCFF018MKA 753 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 190 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 1161 bp overlap
ChIP DE DE-FOXA2-2 1136 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 373 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 838 bp overlap
ChIP SK-N-SH ENCFF764OZD 293 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 679 bp overlap
GATA3 10 datasets
ChIP BE2C GSE65664.GATA3.BE2C 621 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 467 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 456 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 301 bp overlap
ChIP NGP GSE65664.GATA3.NGP 214 bp overlap
ChIP SH-SY5Y ENCFF475HYF 223 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 662 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 274 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 236 bp overlap
ChIP SK-N-SH ENCFF040SSB 104 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 1120 bp overlap
ChIP DE DE-GATA4-2 1257 bp overlap
ChIP foregut GSE117136.GATA4.foregut 526 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 314 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 660 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 1153 bp overlap
ChIP DE DE-GATA6-2 1257 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1112 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 1039 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 239 bp overlap
GBX1 1 dataset
Motif DE_72h DE_72h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_72h DE_72h-GBX2_MA0890.2 6 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 768 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 614 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 522 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 293 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 352 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 362 bp overlap
HESX1 1 dataset
Motif DE_72h DE_72h-HESX1_MA0894.2 6 bp overlap
HNF4A 1 dataset
Motif DE_72h DE_72h-HNF4A_MA1494.2 14 bp overlap
HOXA7 1 dataset
Motif DE_72h DE_72h-HOXA7_MA1498.3 6 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 331 bp overlap
KDM1A 4 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 214 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 163 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 342 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 281 bp overlap
LBX1 1 dataset
Motif DE_72h DE_72h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_72h DE_72h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_72h DE_72h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_72h DE_72h-LHX9_MA0701.3 7 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 404 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 335 bp overlap
MSX1 1 dataset
Motif DE_72h DE_72h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_72h DE_72h-MSX2_MA0708.3 6 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 465 bp overlap
MXI1 3 datasets
ChIP SK-N-SH ENCFF746HVJ 491 bp overlap
ChIP SK-N-SH ENCFF746HVJ 491 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 298 bp overlap
MYCN 5 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 379 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 314 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 768 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 190 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 243 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 398 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 345 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 287 bp overlap
MYOG 2 datasets
ChIP RH4 GSE83726.MYOG.RH4 344 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 176 bp overlap
Msx3 1 dataset
Motif DE_72h DE_72h-Msx3_MA0709.2 6 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 387 bp overlap
ChIP hESC GSE18292.NANOG.hESC 151 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_72h DE_72h-NFATC4_MA1525.3 9 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 151 bp overlap
NR2F1 1 dataset
Motif DE_72h DE_72h-NR2F1_MA1537.2 13 bp overlap
Nfat5 1 dataset
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Nobox 1 dataset
Motif DE_72h DE_72h-Nobox_MA0125.2 6 bp overlap
Nr2f6 1 dataset
Motif DE_72h DE_72h-Nr2f6_MA0677.2 13 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 363 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 659 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 999 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
PPARD 1 dataset
Motif DE_72h DE_72h-PPARD_MA1550.2 14 bp overlap
PRRX2 1 dataset
Motif DE_72h DE_72h-PRRX2_MA0075.4 7 bp overlap
RAD21 4 datasets
ChIP RH4 GSE83726.RAD21.RH4 187 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 180 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 371 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 296 bp overlap
RAX 1 dataset
Motif DE_72h DE_72h-RAX_MA0718.2 6 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 321 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 827 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 122 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 672 bp overlap
REST 3 datasets
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 139 bp overlap
ChIP neural ENCSR000BTV.REST.neural 125 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
RORA 1 dataset
Motif DE_72h DE_72h-RORA_MA0072.2 11 bp overlap
RXRB 1 dataset
Motif DE_72h DE_72h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_72h DE_72h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_72h DE_72h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1096 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 274 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 341 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 436 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 212 bp overlap
SMARCA4 6 datasets
ChIP NGP GSE134626.SMARCA4.NGP 161 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 372 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 726 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 222 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 164 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 168 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 958 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1204 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 358 bp overlap
ChIP hESC GSE18292.SOX2.hESC 115 bp overlap
SOX8 3 datasets
ChIP RH4 GSE116344.SOX8.RH4 304 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 207 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 250 bp overlap
SPIC 1 dataset
Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap
Stat2 2 datasets
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 254 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 450 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 391 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 573 bp overlap
ChIP SK-N-SH ENCFF270OWF 340 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 565 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 565 bp overlap
ChIP SK-N-SH ENCFF754TJT 401 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 270 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 441 bp overlap
THRB 1 dataset
Motif DE_72h DE_72h-THRB_MA1574.2 13 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 191 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 603 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 166 bp overlap
ZBTB6 1 dataset
Motif DE_72h DE_72h-ZBTB6_MA1581.2 9 bp overlap
ZFP57 2 datasets
ChIP hESC GSE115387.ZFP57.hESC 238 bp overlap
ChIP hESC GSE115387.ZFP57.hESC 201 bp overlap
ZNF140 1 dataset
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap