chr1 : 200,043,203 – 200,043,419
216 bp 64 TFs 1 linked gene
This 216 bp open chromatin element is linked to NR5A2 and is bound by 64 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NR5A2 379 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:200,038,203 – 200,048,419
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 216 bp overlap
BRD4 2 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 158 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 114 bp overlap
CBX2 3 datasets
ChIP HepG2 ENCFF838BNI 131 bp overlap
ChIP HepG2 ENCFF838BNI 51 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 216 bp overlap
CBX4 1 dataset
ChIP HEK293T GSE53495.CBX4.HEK293T 216 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 152 bp overlap
CBX8 3 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 216 bp overlap
ChIP A549 ENCFF656LMW 216 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 216 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 216 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 146 bp overlap
ESR1 1 dataset
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 124 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 172 bp overlap
EZH2 31 datasets
ChIP A673 ENCFF790MVL 216 bp overlap
ChIP A673 ENCFF955JRZ 216 bp overlap
ChIP B cell ENCFF803EMO 182 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 216 bp overlap
ChIP DOHH2 ENCFF528GDC 185 bp overlap
ChIP GM23248 ENCFF404ZHM 216 bp overlap
ChIP GM23248 ENCFF404ZHM 216 bp overlap
ChIP GM23248 ENCFF506FWX 216 bp overlap
ChIP H1 ENCFF232NZA 216 bp overlap
ChIP HepG2 ENCFF912EIW 74 bp overlap
ChIP OCI-LY7 ENCFF395KPU 147 bp overlap
ChIP OCI-LY7 ENCFF434OYG 147 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 181 bp overlap
ChIP SK-N-SH ENCFF657FZK 164 bp overlap
ChIP T98G GSE112240.EZH2.T98G 207 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 216 bp overlap
ChIP astrocyte ENCFF365JTP 216 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 185 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 216 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 216 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 216 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 216 bp overlap
ChIP fibroblast of lung ENCFF479BAW 160 bp overlap
ChIP hepatocyte ENCFF118DKH 95 bp overlap
ChIP hepatocyte ENCFF552DZB 216 bp overlap
ChIP keratinocyte ENCFF070STK 192 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 112 bp overlap
ChIP neural cell ENCFF610EPB 154 bp overlap
ChIP neural progenitor cell ENCFF018MKA 216 bp overlap
ChIP neural progenitor cell ENCFF472NFV 216 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 175 bp overlap
FOXA1 15 datasets
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 193 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 150 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 144 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 216 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 201 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 216 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 197 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 200 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 216 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 128 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 216 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 196 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 142 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 93 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 91 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 94 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 197 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 216 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 116 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 162 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 93 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 85 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 131 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 148 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 105 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 87 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 57 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 77 bp overlap
HOXB13 1 dataset
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 191 bp overlap
IRF2BP2 1 dataset
ChIP HEK293 GSE124636.IRF2BP2.HEK293 64 bp overlap
JARID2 1 dataset
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 199 bp overlap
KMT2A 10 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 171 bp overlap
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 216 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 216 bp overlap
ChIP HEK293T_C-term_shCtrl GSE90762.KMT2A.HEK293T_C-term_shCtrl 216 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 216 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 216 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 216 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 200 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 216 bp overlap
ChIP MCF-7_C-term_TTP22 GSE90762.KMT2A.MCF-7_C-term_TTP22 216 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 216 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 216 bp overlap
ONECUT2 1 dataset
ChIP A-549 GSE102599.ONECUT2.A-549 216 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 216 bp overlap
PGR 1 dataset
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 73 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCFF174WDB 169 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 216 bp overlap
POU5F1 1 dataset
ChIP hESC ENCSR264RJX.POU5F1.hESC 141 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 111 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 102 bp overlap
RAD21 1 dataset
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 141 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 216 bp overlap
REST 6 datasets
ChIP H1 ENCFF429RUE 216 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 216 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 138 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 184 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 216 bp overlap
ChIP liver ENCSR867WPH.REST.liver 145 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 216 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 216 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 65 bp overlap
ChIP hMSC_D10 GSE125166.RNF2.hMSC_D10 216 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 209 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 213 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 216 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 165 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 216 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 216 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 142 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 179 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 216 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 134 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 216 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 214 bp overlap
STAT3 2 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 60 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 109 bp overlap
SUZ12 3 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 98 bp overlap
ChIP H1 ENCFF881NFR 216 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 90 bp overlap
TAF1 2 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 130 bp overlap
ChIP liver ENCSR016BMM.TAF1.liver 174 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 172 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 216 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 203 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 216 bp overlap
YY1 2 datasets
ChIP WA01 ENCSR000BKD.YY1.WA01 216 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 71 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 112 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 207 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 216 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 52 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 78 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 154 bp overlap
ZNF121 1 dataset
ChIP HEK293 GSE76494.ZNF121.HEK293 215 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 169 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 141 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 182 bp overlap
ChIP HEK293 ENCFF784SLD 187 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 216 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 55 bp overlap
ChIP HEK293 ENCFF944VMC 216 bp overlap
ZNF343 1 dataset
ChIP HEK293T GSE78099.ZNF343.HEK293T 208 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 216 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 165 bp overlap
ZNF800 1 dataset
ChIP Hep-G2 ENCSR701WPG.ZNF800.Hep-G2 200 bp overlap
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