chr10 : 29,273,431 – 29,273,931
500 bp 102 TFs 1 linked gene
This 500 bp open chromatin element is linked to BAMBI and is bound by 102 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BAMBI 596.2 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:29,268,431 – 29,278,931
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 209 bp overlap
BMI1 1 dataset
ChIP K-562 ENCSR782WRO.BMI1.K-562 107 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CEBPG 4 datasets
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
Motif DE_48h DE_48h-CEBPG_MA1636.2 10 bp overlap
Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap
Motif DE_72h DE_72h-CEBPG_MA1636.2 10 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 289 bp overlap
DBP 4 datasets
Motif DE_36h DE_36h-DBP_MA0639.2 10 bp overlap
Motif DE_48h DE_48h-DBP_MA0639.2 10 bp overlap
Motif DE_60h DE_60h-DBP_MA0639.2 10 bp overlap
Motif DE_72h DE_72h-DBP_MA0639.2 10 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 241 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 397 bp overlap
ELF1 4 datasets
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
Motif DE_60h DE_60h-ELF1_MA0473.4 9 bp overlap
Motif DE_72h DE_72h-ELF1_MA0473.4 9 bp overlap
ELF3 4 datasets
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap
Motif DE_72h DE_72h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 316 bp overlap
ETV5::HOXA2 4 datasets
Motif DE_36h DE_36h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_48h DE_48h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_60h DE_60h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_72h DE_72h-ETV5HOXA2_MA1948.2 12 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 119 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 500 bp overlap
ChIP DE DE-FOXA2-2 500 bp overlap
FOXJ2::ELF1 2 datasets
Motif DE_36h DE_36h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif DE_60h DE_60h-FOXJ2ELF1_MA1952.2 11 bp overlap
Foxl2 4 datasets
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
GATA2 2 datasets
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 382 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 311 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 500 bp overlap
ChIP DE DE-GATA4-2 500 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 309 bp overlap
ChIP foregut GSE117136.GATA4.foregut 500 bp overlap
GATA6 12 datasets
ChIP AGS GSE51936.GATA6.AGS 124 bp overlap
ChIP DE DE-GATA6-1 500 bp overlap
ChIP DE DE-GATA6-2 500 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 500 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 500 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 500 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 500 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 500 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 500 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 500 bp overlap
ChIP foregut GSE117136.GATA6.foregut 500 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 500 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 362 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 362 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 243 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 273 bp overlap
HLF 6 datasets
Motif DE_36h DE_36h-HLF_MA0043.4 9 bp overlap
Motif DE_48h DE_48h-HLF_MA0043.4 9 bp overlap
Motif DE_60h DE_60h-HLF_MA0043.4 9 bp overlap
Motif DE_72h DE_72h-HLF_MA0043.4 9 bp overlap
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 309 bp overlap
ChIP HepG2 ENCFF854JLR 245 bp overlap
IKZF1 1 dataset
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
IRF4 1 dataset
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 87 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 500 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 500 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 500 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 483 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 500 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 216 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 188 bp overlap
NFIL3 4 datasets
Motif DE_36h DE_36h-NFIL3_MA0025.3 9 bp overlap
Motif DE_48h DE_48h-NFIL3_MA0025.3 9 bp overlap
Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap
Motif DE_72h DE_72h-NFIL3_MA0025.3 9 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 234 bp overlap
OVOL1 2 datasets
Motif DE_60h DE_60h-OVOL1_MA1544.2 10 bp overlap
Motif DE_72h DE_72h-OVOL1_MA1544.2 10 bp overlap
OVOL3 1 dataset
ChIP HEK293 ENCFF898STB 357 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 265 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 500 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 177 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 307 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 303 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 62 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 228 bp overlap
RUNX3 3 datasets
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap
Motif DE_72h DE_72h-RUNX3_MA0684.3 8 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 395 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 305 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 186 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 305 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 210 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 333 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 185 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 500 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 500 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 500 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 500 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 500 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 500 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 500 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 499 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 182 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 178 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 226 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 289 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 242 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 300 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 484 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 231 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 421 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 397 bp overlap
SP2 1 dataset
ChIP HEK293 GSE76494.SP2.HEK293 147 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 219 bp overlap
SP5 4 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SP5_Zebrafish 1 dataset
ChIP HEK293_Zebrafish_dDBD GSE121316.SP5_Zebrafish.HEK293_Zebrafish_dDBD 157 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 449 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 280 bp overlap
SPI1 1 dataset
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 105 bp overlap
SUZ12 1 dataset
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 241 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 271 bp overlap
TEF 4 datasets
Motif DE_36h DE_36h-TEF_MA0843.2 10 bp overlap
Motif DE_48h DE_48h-TEF_MA0843.2 10 bp overlap
Motif DE_60h DE_60h-TEF_MA0843.2 10 bp overlap
Motif DE_72h DE_72h-TEF_MA0843.2 10 bp overlap
TP53 1 dataset
ChIP IMR-90 GSE42728.TP53.IMR-90 115 bp overlap
TRIM28 5 datasets
ChIP HEK293 ENCFF265CEM 500 bp overlap
ChIP HEK293 ENCFF582MWI 500 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 273 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 267 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 153 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 240 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 360 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 309 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 357 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 403 bp overlap
ZBTB26 1 dataset
ChIP HEK293 GSE76494.ZBTB26.HEK293 273 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 393 bp overlap
ZBTB6 3 datasets
ChIP HEK293 ENCFF881ECZ 330 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 306 bp overlap
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 241 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 243 bp overlap
ZIC1 4 datasets
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 205 bp overlap
ZIC4 4 datasets
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 4 datasets
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZIM3 3 datasets
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ChIP HEK293 GSE76494.ZIM3.HEK293 198 bp overlap
ZKSCAN1 2 datasets
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap
ZKSCAN5 8 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF133 2 datasets
ChIP HEK293 ENCFF844RST 378 bp overlap
ChIP HEK293 ENCSR283MWQ.ZNF133.HEK293 274 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 212 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 282 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 235 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 158 bp overlap
ZNF257 4 datasets
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF30 1 dataset
ChIP HEK293 GSE76494.ZNF30.HEK293 194 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 208 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 179 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 427 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 309 bp overlap
ZNF490 1 dataset
ChIP HEK293 GSE76494.ZNF490.HEK293 208 bp overlap
ZNF528 7 datasets
Motif DE_36h DE_36h-ZNF528_MA1597.1 17 bp overlap
Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
Motif DE_72h DE_72h-ZNF528_MA1597.1 17 bp overlap
Motif DE_72h DE_72h-ZNF528_MA1597.1 17 bp overlap
ChIP HEK293 GSE76494.ZNF528.HEK293 272 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 213 bp overlap
ZNF582 3 datasets
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
Motif DE_72h DE_72h-ZNF582_MA1983.2 19 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 426 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 132 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 397 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 269 bp overlap
ZNF770 6 datasets
Motif DE_36h DE_36h-ZNF770_MA2099.1 8 bp overlap
Motif DE_48h DE_48h-ZNF770_MA2099.1 8 bp overlap
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap
Motif DE_72h DE_72h-ZNF770_MA2099.1 8 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 265 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 251 bp overlap
ZNF85 4 datasets
Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 225 bp overlap
ZSCAN21 2 datasets
ChIP HEK293 ENCFF582WUP 441 bp overlap
ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 258 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 271 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 182 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 499 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 318 bp overlap
Zic2 4 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Huangfu Lab · Publications · Resources · Contact