chr9 : 99,825,411 – 99,826,024
613 bp 83 TFs 2 linked genes
This 613 bp open chromatin element is linked to NR4A3 and ENSG00000237461 and is bound by 83 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NR4A3 3.6 kb Proximal Proximity
ENSG00000237461 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:99,820,411 – 99,831,024
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 208 bp overlap
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 434 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 359 bp overlap
AR 4 datasets
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 296 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 121 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 394 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 249 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 587 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 192 bp overlap
ChIP HepG2 ENCFF207QHL 108 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 284 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 219 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 552 bp overlap
BRD4 8 datasets
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 242 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 500 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 388 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 237 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 495 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 216 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 235 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 556 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 232 bp overlap
CBX7 2 datasets
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 466 bp overlap
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 187 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 237 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 200 bp overlap
CEBPB 2 datasets
ChIP WA01 ENCSR000EBV.CEBPB.WA01 133 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 146 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 449 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 361 bp overlap
CTCF 13 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 163 bp overlap
ChIP GM12874 ENCFF942MTD 261 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 179 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 499 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 201 bp overlap
ChIP neutrophil ENCSR785YRL.CTCF.neutrophil 291 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 168 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 260 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 174 bp overlap
ChIP BLaER1 ENCFF274GAT 377 bp overlap
ChIP BLaER1 ENCFF896HSY 309 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 149 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 156 bp overlap
ERG 3 datasets
ChIP SKNO-1 GSE23730.ERG.SKNO-1 245 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 236 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 148 bp overlap
EZH2 14 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 407 bp overlap
ChIP GM23338 ENCFF613YON 377 bp overlap
ChIP GM23338 ENCFF613YON 98 bp overlap
ChIP GM23338 ENCFF886DXX 357 bp overlap
ChIP H1 ENCFF232NZA 613 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 252 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 311 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 482 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 108 bp overlap
ChIP hepatocyte ENCFF552DZB 139 bp overlap
ChIP hepatocyte ENCFF552DZB 429 bp overlap
ChIP hepatocyte ENCFF552DZB 85 bp overlap
ChIP neural progenitor cell ENCFF018MKA 459 bp overlap
ChIP neural progenitor cell ENCFF472NFV 613 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 325 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 308 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 202 bp overlap
HCFC1 1 dataset
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 116 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 238 bp overlap
HINFP 2 datasets
Motif DE_12h DE_12h-HINFP_MA0131.3 8 bp overlap
Motif ES_0h ES_0h-HINFP_MA0131.3 8 bp overlap
JARID2 1 dataset
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 563 bp overlap
JMJD1C 1 dataset
ChIP NB4 GSE63484.JMJD1C.NB4 117 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 350 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 291 bp overlap
ChIP H1 ENCFF078LED 576 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 479 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 295 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 206 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 62 bp overlap
MAX 1 dataset
ChIP P493-6 GSE36354.MAX.P493-6 275 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 209 bp overlap
NFIB 2 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap
NR1H2::RXRA 2 datasets
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
Motif ES_0h ES_0h-NR1H2RXRA_MA0115.1 17 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 380 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 293 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 82 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 250 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF725QFT 56 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 430 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 339 bp overlap
RAD21 1 dataset
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 527 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 264 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 516 bp overlap
RBM39 4 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 353 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 330 bp overlap
ChIP HepG2 ENCFF084YZE 613 bp overlap
ChIP HepG2 ENCFF801JUH 612 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 346 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 218 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 227 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 431 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 334 bp overlap
RUNX1 1 dataset
ChIP NB4 GSE81992.RUNX1.NB4 146 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 163 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 198 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 254 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 238 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 292 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 295 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 227 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 176 bp overlap
SPI1 1 dataset
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 82 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 330 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 449 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 255 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 193 bp overlap
SUZ12 6 datasets
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 613 bp overlap
ChIP H1 ENCFF881NFR 613 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 221 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 564 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 391 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 120 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 176 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 413 bp overlap
TP63 2 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 136 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 147 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 240 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 92 bp overlap
ChIP AF22 GSE84259.TRIM28.AF22 304 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 296 bp overlap
ZNF343 2 datasets
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
Motif ES_0h ES_0h-ZNF343_MA1711.2 16 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF454 2 datasets
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
Motif ES_0h ES_0h-ZNF454_MA1712.2 17 bp overlap
ZNF549 3 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF610 2 datasets
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif ES_0h ES_0h-ZNF610_MA1713.2 10 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
ZNF770 2 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
ZSCAN31 2 datasets
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Motif ES_0h ES_0h-ZSCAN31_MA1722.2 18 bp overlap
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