chr9 : 98,809,790 – 98,810,348
558 bp 69 TFs 2 linked genes
This 558 bp open chromatin element is linked to GALNT12 and ENSG00000285706 and is bound by 69 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GALNT12 2.1 kb Proximal Proximity
ENSG00000285706 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:98,804,790 – 98,815,348
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 57 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BIP.BCL11A.WA01 108 bp overlap
BRD2 2 datasets
ChIP K-562 GSE140325.BRD2.K-562 107 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 272 bp overlap
BRD4 2 datasets
ChIP K-562 GSE140325.BRD4.K-562 180 bp overlap
ChIP K-562_dilution-6-100 GSE140325.BRD4.K-562_dilution-6-100 216 bp overlap
CREB1 1 dataset
ChIP K562 ENCFF175LMX 257 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 225 bp overlap
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 200 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 280 bp overlap
ChIP BLaER1 ENCFF896HSY 195 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 350 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 224 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 219 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 98 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 142 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 510 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 198 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 220 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 287 bp overlap
ChIP DE DE-FOXA2-2 279 bp overlap
FOXK2 1 dataset
ChIP K-562 ENCSR302AWT.FOXK2.K-562 169 bp overlap
GABPA 1 dataset
ChIP K562 ENCFF139LXS 403 bp overlap
GATA2 1 dataset
ChIP K-562 ENCSR000DKA.GATA2.K-562 501 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 342 bp overlap
ChIP DE DE-GATA4-2 313 bp overlap
ChIP foregut GSE117136.GATA4.foregut 283 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 411 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 338 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 380 bp overlap
ChIP DE DE-GATA6-2 368 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 286 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 350 bp overlap
ChIP foregut GSE117136.GATA6.foregut 309 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 202 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 365 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 275 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 262 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 118 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 270 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 249 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR000DJZ.HDAC8.K-562 308 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 454 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 558 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 126 bp overlap
HMBOX1 2 datasets
ChIP K562 ENCFF055GAZ 263 bp overlap
ChIP K562 ENCFF317JJX 282 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 114 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 323 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 223 bp overlap
ChIP K562 ENCFF348IBL 122 bp overlap
JUND 1 dataset
ChIP K562 ENCFF336RCR 210 bp overlap
KDM1A 1 dataset
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 73 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 94 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 352 bp overlap
MAZ 2 datasets
ChIP K562 ENCFF333ZIV 299 bp overlap
ChIP K562 ENCFF333ZIV 100 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 216 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 103 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 209 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR180NCY.MTA3.K-562 558 bp overlap
ChIP K-562 ENCSR914NEI.MTA3.K-562 214 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 321 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 190 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 256 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 231 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 59 bp overlap
PKNOX1 1 dataset
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 347 bp overlap
PML 1 dataset
ChIP K562 ENCFF801LKH 427 bp overlap
POLR2A 6 datasets
ChIP H1 ENCFF566JSR 470 bp overlap
ChIP H1 ENCFF833NJP 392 bp overlap
ChIP K562 ENCFF215CWW 558 bp overlap
ChIP K562 ENCFF215CWW 418 bp overlap
ChIP K562 ENCFF262YXJ 383 bp overlap
ChIP stomach ENCFF820WZN 217 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 122 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 175 bp overlap
RAD21 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 209 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 107 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 186 bp overlap
RFX1 4 datasets
ChIP K-562 ENCSR041AXL.RFX1.K-562 371 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 361 bp overlap
ChIP K562 ENCFF421AVO 348 bp overlap
ChIP K562 ENCFF809XVG 333 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 284 bp overlap
SMAD5 1 dataset
ChIP K-562 ENCSR000FCD.SMAD5.K-562 259 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 131 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 218 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 405 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 215 bp overlap
SREBF2 1 dataset
ChIP K562 ENCFF440PZY 289 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 107 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 199 bp overlap
TAF7 3 datasets
ChIP H1 ENCFF061XZZ 337 bp overlap
ChIP K-562 ENCSR000BNM.TAF7.K-562 109 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 171 bp overlap
TAL1 3 datasets
ChIP K-562 ENCSR000EHB.TAL1.K-562 74 bp overlap
ChIP K562 ENCFF661CCK 151 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP K-562 GSE55306.TBP.K-562 210 bp overlap
ChIP K562 ENCFF901UYM 381 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 141 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 136 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 411 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 118 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 194 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 525 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 435 bp overlap
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