chr9 : 84,340,134 84,340,839
705 bp 75 TFs 1 linked gene
This 705 bp open chromatin element is linked to SLC28A3 and is bound by 75 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SLC28A3 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:84,335,134 – 84,345,839
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AFF4 3 datasets
ChIP HeLa GSE40632.AFF4.HeLa 340 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 68 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 203 bp overlap
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 176 bp overlap
ARID1A 4 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 372 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 300 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 705 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 705 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 588 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 183 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 195 bp overlap
BRD4 2 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 266 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 313 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 181 bp overlap
CEBPA 2 datasets
ChIP MV4-11 GSE88746.CEBPA.MV4-11 195 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 254 bp overlap
CEBPB 10 datasets
ChIP HeLa-S3 ENCFF722WEG 141 bp overlap
ChIP Hep-G2 GSE123097.CEBPB.Hep-G2 104 bp overlap
ChIP Ishikawa ENCFF010USJ 132 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 234 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 170 bp overlap
ChIP MCF-7 ENCFF772ZTQ 122 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 92 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 124 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 164 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 77 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF956TPS 61 bp overlap
CREBBP 5 datasets
ChIP MCF-7 ERP000901.CREBBP.MCF-7 53 bp overlap
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 79 bp overlap
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 315 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 259 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 247 bp overlap
CTCF 3 datasets
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 132 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 245 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 148 bp overlap
Cebpa 7 datasets
ChIP BLaER1 ENCFF031ISE 186 bp overlap
ChIP BLaER1 ENCFF093OYK 137 bp overlap
ChIP BLaER1 ENCFF262VBH 180 bp overlap
ChIP BLaER1 ENCFF274GAT 110 bp overlap
ChIP BLaER1 ENCFF364PUR 222 bp overlap
ChIP BLaER1 ENCFF364PUR 107 bp overlap
ChIP BLaER1 ENCFF460KDD 62 bp overlap
E2F4 1 dataset
ChIP MCF-10A ENCSR000DOR.E2F4.MCF-10A 87 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 236 bp overlap
ELL2 3 datasets
ChIP HeLa GSE40632.ELL2.HeLa 92 bp overlap
ChIP HeLa GSE40632.ELL2.HeLa 150 bp overlap
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 274 bp overlap
EP300 4 datasets
ChIP Ishikawa ENCFF364ZWT 250 bp overlap
ChIP Ishikawa ENCFF364ZWT 148 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 262 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 186 bp overlap
ESR1 37 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 243 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 117 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 190 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 143 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 76 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 185 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 180 bp overlap
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 152 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 705 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 705 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 93 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 204 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 258 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 259 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 270 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 241 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 194 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 208 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 168 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 289 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 251 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 224 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 227 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 398 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 154 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 145 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 123 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 705 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 123 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 495 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 705 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 56 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 145 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 223 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 285 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 222 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 318 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 330 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 108 bp overlap
FOXA1 1 dataset
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 193 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 68 bp overlap
FOXM1 3 datasets
ChIP Ishikawa ENCFF578VDD 332 bp overlap
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 152 bp overlap
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 153 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 386 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 399 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 161 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 330 bp overlap
GRHL2 5 datasets
ChIP HBE GSE46194.GRHL2.HBE 126 bp overlap
ChIP LNCaP GSE80256.GRHL2.LNCaP 202 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 320 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 185 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 182 bp overlap
JUN 2 datasets
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 70 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 254 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 60 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 353 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 161 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 212 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 119 bp overlap
KLF15 1 dataset
ChIP HEK293 GSE76494.KLF15.HEK293 130 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 304 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 70 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 152 bp overlap
KLF5 3 datasets
ChIP ESO-26 GSE132680.KLF5.ESO-26 279 bp overlap
ChIP HEK293 GSE88976.KLF5.HEK293 79 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 114 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCFF064TDQ 296 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 133 bp overlap
MED1 5 datasets
ChIP G296S GSE85628.MED1.G296S 217 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 217 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 531 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 529 bp overlap
ChIP cardiomyocyte_7 GSE85628.MED1.cardiomyocyte_7 260 bp overlap
MYC 2 datasets
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 113 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 370 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 435 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 150 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 83 bp overlap
NFIC 3 datasets
ChIP Ishikawa ENCFF029AAD 152 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 256 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 152 bp overlap
NFKB1 2 datasets
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 77 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 217 bp overlap
NR3C1 3 datasets
ChIP HeLa-B2_GRKD_DMSO GSE24518.NR3C1.HeLa-B2_GRKD_DMSO 111 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 229 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 213 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 96 bp overlap
POLR2A 6 datasets
ChIP Peyer's patch ENCFF767HVN 322 bp overlap
ChIP body of pancreas ENCFF501FEC 408 bp overlap
ChIP body of pancreas ENCFF675RCN 429 bp overlap
ChIP body of pancreas ENCFF727UBE 272 bp overlap
ChIP breast epithelium ENCFF955FMX 289 bp overlap
ChIP breast epithelium ENCFF955FMX 69 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 60 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 125 bp overlap
RELA 10 datasets
ChIP 786-O GSE86092.RELA.786-O 113 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 176 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 80 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 59 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 60 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 249 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 132 bp overlap
ChIP KB_IL GSE52469.RELA.KB_IL 107 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 52 bp overlap
ChIP mammary-epithelial-cell_IL1 GSE71069.RELA.mammary-epithelial-cell_IL1 181 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 153 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 91 bp overlap
SMAD3 1 dataset
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 230 bp overlap
SMARCA4 2 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 339 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 366 bp overlap
SMARCB1 4 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 50 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 74 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 176 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 364 bp overlap
SMARCC1 1 dataset
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 248 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 110 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 108 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 108 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 108 bp overlap
SNAI2 2 datasets
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 198 bp overlap
ChIP keratinocyte_SHCTR GSE55421.SNAI2.keratinocyte_SHCTR 227 bp overlap
SRF 2 datasets
ChIP Ishikawa ENCFF992QXM 102 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 132 bp overlap
STAT3 7 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 76 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 135 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 98 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 119 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 61 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 91 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 147 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 131 bp overlap
TBX5 8 datasets
ChIP G296S GSE85628.TBX5.G296S 705 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 705 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 647 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 619 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 619 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 362 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 539 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 96 bp overlap
TCF12 3 datasets
ChIP Ishikawa ENCFF467DDW 91 bp overlap
ChIP Ishikawa ENCFF467DDW 197 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 705 bp overlap
TEAD4 6 datasets
ChIP Ishikawa ENCFF772OTG 130 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCFF772OTG 166 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 233 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 150 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TFAP2C 2 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 280 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 496 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 113 bp overlap
XBP1 1 dataset
ChIP LNCaP_px330 GSE121880.XBP1.LNCaP_px330 266 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 121 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 152 bp overlap
ZIC2 1 dataset
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 376 bp overlap
ZIC5 5 datasets
ChIP HCT-116_C18-CT289 GSE127960.ZIC5.HCT-116_C18-CT289 165 bp overlap
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 583 bp overlap
ChIP HCT-116_WT-FL290 GSE127960.ZIC5.HCT-116_WT-FL290 436 bp overlap
ChIP HCT-116_sc1 GSE127960.ZIC5.HCT-116_sc1 465 bp overlap
ChIP HCT-116_sc2 GSE127960.ZIC5.HCT-116_sc2 385 bp overlap
ZNF257 2 datasets
ChIP HEK293T GSE78099.ZNF257.HEK293T 138 bp overlap
ChIP HEK293T GSE78099.ZNF257.HEK293T 159 bp overlap
ZNF549 1 dataset
ChIP HEK293 GSE76494.ZNF549.HEK293 157 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 161 bp overlap