chr9:33,267,199–33,267,770

chr9 : 33,267,199 – 33,267,770

571 bp 106 TFs 7 linked genes

This 571 bp open chromatin element is linked to 7 target genes and is bound by 106 transcription factors.

Linked Genes

7 genes

Gene	Expression	Dist. to TSS	Distance	Link type
CHMP5		2.2 kb	Proximal	Proximity
BAG1		2.5 kb	Proximal	Proximity
NFX1		23.1 kb	Distal	Multiome
B4GALT1		100.1 kb	Distal	Multiome
SMU1		190.8 kb	Distal	Multiome
DNAJA1		242.2 kb	Distal	Multiome
APTX		265.8 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

106 transcription factors

ARID1B 2 datasets

ChIP K-562 ENCSR822CCM.ARID1B.K-562 377 bp overlap

ChIP K562 ENCFF938UXQ 538 bp overlap

Bach1::Mafk 1 dataset

Motif DE_60h DE_60h-Bach1Mafk_MA0591.2 12 bp overlap

CBFA2T3 2 datasets

ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 426 bp overlap

ChIP K562 ENCFF673OEZ 411 bp overlap

CTBP1 1 dataset

ChIP K-562 ENCSR201NQZ.CTBP1.K-562 402 bp overlap

DDX20 1 dataset

ChIP K-562 ENCSR446LAV.DDX20.K-562 332 bp overlap

ChIP K562 ENCFF511ZZZ 420 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 412 bp overlap

ERF::FOXI1 1 dataset

Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap

ERF::FOXO1 1 dataset

Motif DE_60h DE_60h-ERFFOXO1_MA1936.2 12 bp overlap

ChIP MCF-7 GSE35109.ESR1.MCF-7 154 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_60h DE_60h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA1 1 dataset

ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 228 bp overlap

FOXA2 3 datasets

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 253 bp overlap

ChIP DE DE-FOXA2-1 518 bp overlap

ChIP DE DE-FOXA2-2 446 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_60h DE_60h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_60h DE_60h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_60h DE_60h-FOXO1ELK3_MA1955.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_60h DE_60h-FOXO1FLI1_MA1956.2 13 bp overlap

GATA1 3 datasets

ChIP K-562 GSE107726.GATA1.K-562 165 bp overlap

ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 389 bp overlap

ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 184 bp overlap

GATA2 4 datasets

Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap

Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap

Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap

Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap

GATA3 1 dataset

ChIP CD4_TH2 GSE72266.GATA3.CD4_TH2 392 bp overlap

GATA4 7 datasets

ChIP DE DE-GATA4-1 571 bp overlap

ChIP DE DE-GATA4-2 571 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap

Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 454 bp overlap

GATA5 4 datasets

Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap

Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap

Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap

Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap

GATA6 11 datasets

ChIP AGS GSE51705.GATA6.AGS 134 bp overlap

ChIP DE DE-GATA6-1 571 bp overlap

ChIP DE DE-GATA6-2 571 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap

Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 571 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 571 bp overlap

ChIP foregut GSE117136.GATA6.foregut 453 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 306 bp overlap

Gata3 4 datasets

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap

Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap

HDAC1 2 datasets

ChIP K-562 ENCSR387UWP.HDAC1.K-562 240 bp overlap

ChIP K-562 ENCSR711VWL.HDAC1.K-562 207 bp overlap

HDAC2 2 datasets

ChIP K-562 ENCSR893WSB.HDAC2.K-562 327 bp overlap

ChIP K562 ENCFF744ALD 421 bp overlap

ChIP K-562 ENCSR197ALX.HDGF.K-562 350 bp overlap

HNF4A 2 datasets

Motif DE_60h DE_60h-HNF4A_MA1494.2 14 bp overlap

Motif DE_72h DE_72h-HNF4A_MA1494.2 14 bp overlap

Hnf1A 2 datasets

Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap

Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap

IKZF1 4 datasets

Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap

ChIP K-562 ENCSR395HWC.IKZF1.K-562 399 bp overlap

ChIP K562 ENCFF348IBL 128 bp overlap

ChIP K562 ENCFF771OHZ 244 bp overlap

IRF1 3 datasets

ChIP K-562 GSE129380.IRF1.K-562 180 bp overlap

ChIP K-562 ENCSR000EGL.IRF1.K-562 123 bp overlap

ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 276 bp overlap

IRF4 2 datasets

ChIP B-cell GSE142493.IRF4.B-cell 285 bp overlap

ChIP T-cell GSE136853.IRF4.T-cell 483 bp overlap

ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 441 bp overlap

Lef1 2 datasets

Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap

Motif DE_72h DE_72h-Lef1_MA0768.3 8 bp overlap

ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 177 bp overlap

ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 378 bp overlap

Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap

Motif DE_60h DE_60h-MAFA_MA1521.2 13 bp overlap

MAFF 6 datasets

Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap

ChIP HeLa-S3 ENCFF783SBT 277 bp overlap

ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 240 bp overlap

ChIP HepG2 ENCFF452YUT 277 bp overlap

ChIP K-562 ENCSR000EGI.MAFF.K-562 220 bp overlap

ChIP K562 ENCFF071YKK 281 bp overlap

MAFG 2 datasets

ChIP K-562 ENCSR818DQV.MAFG.K-562 523 bp overlap

ChIP K562 ENCFF455EEO 331 bp overlap

MAFK 8 datasets

ChIP A549 ENCFF371EPR 197 bp overlap

Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap

ChIP HeLa-S3 ENCSR000ECK.MAFK.HeLa-S3 156 bp overlap

ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 158 bp overlap

ChIP HepG2 ENCFF743ZOF 241 bp overlap

ChIP HepG2 ENCFF767LDG 257 bp overlap

ChIP IMR-90 ENCFF336DHZ 271 bp overlap

ChIP K562 ENCFF380WHM 281 bp overlap

ChIP K-562 ENCSR411UYA.MTA2.K-562 224 bp overlap

ChIP CD4_TH2 GSE72266.MYB.CD4_TH2 197 bp overlap

ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 152 bp overlap

Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap

Motif DE_60h DE_60h-Mafb_MA0117.3 11 bp overlap

Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap

Mecom 1 dataset

Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap

NFE2 3 datasets

ChIP K-562 ENCSR552YGL.NFE2.K-562 254 bp overlap

ChIP K-562 ENCSR000FCC.NFE2.K-562 278 bp overlap

ChIP K562 ENCFF047YKA 385 bp overlap

NR2C2 2 datasets

Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap

Motif DE_72h DE_72h-NR2C2_MA0504.2 14 bp overlap

NR2F1 2 datasets

Motif DE_60h DE_60h-NR2F1_MA1537.2 13 bp overlap

Motif DE_72h DE_72h-NR2F1_MA1537.2 13 bp overlap

Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap

Nr2f6 2 datasets

Motif DE_60h DE_60h-Nr2f6_MA0677.2 13 bp overlap

Motif DE_72h DE_72h-Nr2f6_MA0677.2 13 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_60h DE_60h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif DE_72h DE_72h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 2 datasets

Motif DE_72h DE_72h-POU5F1_MA1115.2 7 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 452 bp overlap

PPARA::RXRA 2 datasets

Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap

Motif DE_72h DE_72h-PPARARXRA_MA1148.2 17 bp overlap

PPARD 2 datasets

Motif DE_60h DE_60h-PPARD_MA1550.2 14 bp overlap

Motif DE_72h DE_72h-PPARD_MA1550.2 14 bp overlap

PPARG 2 datasets

Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap

Motif DE_72h DE_72h-PPARG_MA0066.2 19 bp overlap

RARA 2 datasets

Motif DE_60h DE_60h-RARA_MA0730.1 17 bp overlap

Motif DE_72h DE_72h-RARA_MA0730.1 17 bp overlap

RARA::RXRA 4 datasets

Motif DE_60h DE_60h-RARARXRA_MA0159.1 17 bp overlap

Motif DE_60h DE_60h-RARARXRA_MA0159.1 17 bp overlap

Motif DE_72h DE_72h-RARARXRA_MA0159.1 17 bp overlap

Motif DE_72h DE_72h-RARARXRA_MA0159.1 17 bp overlap

RARA::RXRG 2 datasets

Motif DE_60h DE_60h-RARARXRG_MA1149.2 17 bp overlap

Motif DE_72h DE_72h-RARARXRG_MA1149.2 17 bp overlap

RELA 2 datasets

ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 177 bp overlap

ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 163 bp overlap

RUNX3 2 datasets

Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap

Motif DE_72h DE_72h-RUNX3_MA0684.3 8 bp overlap

RXRA::VDR 2 datasets

Motif DE_60h DE_60h-RXRAVDR_MA0074.1 15 bp overlap

Motif DE_72h DE_72h-RXRAVDR_MA0074.1 15 bp overlap

RXRB 2 datasets

Motif DE_60h DE_60h-RXRB_MA0855.1 14 bp overlap

Motif DE_72h DE_72h-RXRB_MA0855.1 14 bp overlap

RXRG 2 datasets

Motif DE_60h DE_60h-RXRG_MA0856.1 14 bp overlap

Motif DE_72h DE_72h-RXRG_MA0856.1 14 bp overlap

Rarb 2 datasets

Motif DE_60h DE_60h-Rarb_MA0858.1 17 bp overlap

Motif DE_72h DE_72h-Rarb_MA0858.1 17 bp overlap

Rxra 2 datasets

Motif DE_60h DE_60h-Rxra_MA0512.2 14 bp overlap

Motif DE_72h DE_72h-Rxra_MA0512.2 14 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 525 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 279 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 297 bp overlap

SMARCA4 3 datasets

ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 132 bp overlap

ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 119 bp overlap

ChIP K-562 ENCSR587OQL.SMARCA4.K-562 399 bp overlap

SOX13 2 datasets

Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap

Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 418 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 479 bp overlap

SOX18 2 datasets

Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap

Motif DE_72h DE_72h-SOX18_MA1563.2 8 bp overlap

SOX2 2 datasets

Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap

Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap

SOX4 2 datasets

Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap

Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap

SOX6 2 datasets

ChIP K-562 ENCSR788RSW.SOX6.K-562 409 bp overlap

ChIP K562 ENCFF059YCJ 437 bp overlap

SOX8 2 datasets

Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap

Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap

SOX9 2 datasets

Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap

Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap

SPI1 20 datasets

ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 177 bp overlap

ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 130 bp overlap

ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 123 bp overlap

ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 161 bp overlap

ChIP DC_LPS GSE123347.SPI1.DC_LPS 108 bp overlap

ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 77 bp overlap

ChIP HL-60 ENCFF645GBT 162 bp overlap

ChIP K-562 GSE70482.SPI1.K-562 136 bp overlap

ChIP K-562 ENCSR000BGW.SPI1.K-562 87 bp overlap

ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 150 bp overlap

ChIP K-562_SAHA GSE74999.SPI1.K-562_SAHA 102 bp overlap

ChIP KG-1 GSE128834.SPI1.KG-1 118 bp overlap

ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 151 bp overlap

ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 136 bp overlap

ChIP NB4 GSE128834.SPI1.NB4 124 bp overlap

ChIP THP-1 GSE128834.SPI1.THP-1 63 bp overlap

ChIP U-937 GSE128834.SPI1.U-937 179 bp overlap

ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 158 bp overlap

ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 67 bp overlap

ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 93 bp overlap

Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap

Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap

Motif DE_72h DE_72h-SRY_MA0084.2 7 bp overlap

Sox17 2 datasets

Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap

Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap

Sox3 2 datasets

Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap

Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap

Sox5 2 datasets

Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap

Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap

Sox7 2 datasets

Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap

Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap

Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap

Stat2 1 dataset

Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 283 bp overlap

TAL1 2 datasets

ChIP K-562 ENCSR106FRG.TAL1.K-562 309 bp overlap

ChIP K562 ENCFF620GMX 353 bp overlap

TBX18 2 datasets

Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap

Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap

TBX21 2 datasets

Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap

Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap

TCF12 1 dataset

ChIP K-562 ENCSR744WOO.TCF12.K-562 260 bp overlap

ChIP K-562 ENCSR970OJY.TCF3.K-562 414 bp overlap

TCF7L2 2 datasets

Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap

Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap

THRB 2 datasets

Motif DE_60h DE_60h-THRB_MA1574.2 13 bp overlap

Motif DE_72h DE_72h-THRB_MA1574.2 13 bp overlap

TRPS1 4 datasets

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap

Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap

ZEB2 3 datasets

ChIP K-562 ENCSR322CFO.ZEB2.K-562 461 bp overlap

ChIP K-562 ENCSR004GKA.ZEB2.K-562 428 bp overlap

ChIP K562 ENCFF795CMH 477 bp overlap

Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap

ZKSCAN5 2 datasets

Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap

Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF140 2 datasets

Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap

Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap

ZNF184 1 dataset

ChIP K-562 ENCSR546IHU.ZNF184.K-562 382 bp overlap

ZNF257 3 datasets

Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap

Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap

Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap

ZNF316 1 dataset

ChIP K562 ENCFF838QCD 438 bp overlap

ZNF317 1 dataset

Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap

ZNF418 1 dataset

Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap

ZNF574 2 datasets

Motif DE_60h DE_60h-ZNF574_MA1982.2 14 bp overlap

Motif DE_72h DE_72h-ZNF574_MA1982.2 14 bp overlap

ZNF675 2 datasets

Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap

Motif DE_72h DE_72h-ZNF675_MA1714.2 19 bp overlap

ZNF766 1 dataset

Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap