B4GALT1
beta-1,4-galactosyltransferase 1 | beta4Gal-T1, GGTB2

This gene is one of seven beta-1,4-galactosyltransferase (beta4GalT) genes. They encode type II membrane-bound glycoproteins that appear to have exclusive specificity for the donor substrate UDP-galactose; all transfer galactose in a beta1,4 linkage to similar acceptor sugars: GlcNAc, Glc, and Xyl. Each beta4GalT has a distinct function in the biosynthesis of different glycoconjugates and saccharide structures. As type II membrane proteins, they have an N-terminal hydrophobic signal sequence that directs the protein to the Golgi apparatus and which then remains uncleaved to function as a transmembrane anchor. By sequence similarity, the beta4GalTs form four groups: beta4GalT1 and beta4GalT2, beta4GalT3 and beta4GalT4, beta4GalT5 and beta4GalT6, and beta4GalT7. This gene is unique among the beta4GalT genes because it encodes an enzyme that participates both in glycoconjugate and lactose biosynthesis. For the first activity, the enzyme adds galactose to N-acetylglucosamine residues that are either monosaccharides or the nonreducing ends of glycoprotein carbohydrate chains. The second activity is restricted to lactating mammary tissues where the enzyme forms a heterodimer with alpha-lactalbumin to catalyze UDP-galactose + D-glucose <=> UDP + lactose. The two enzymatic forms result from alternate transcription initiation sites and post-translational processing. Two transcripts, which differ only at the 5' end, with approximate lengths of 4.1 kb and 3.9 kb encode the same protein. The longer transcript encodes the type II membrane-bound, trans-Golgi resident protein involved in glycoconjugate biosynthesis. The shorter transcript encodes a protein which is cleaved to form the soluble lactose synthase. [provided by RefSeq, Jul 2008]

Member of: DE-3 Developmental clusters: GC6
Biological processes 51 terms
Golgi apparatus (GO:0005794)Golgi apparatus (GO:0005794)Golgi apparatus (GO:0005794)Golgi cisterna membrane (GO:0032580)Golgi membrane (GO:0000139)Golgi membrane (GO:0000139)Golgi membrane (GO:0000139)Golgi trans cisterna (GO:0000138)N-acetyllactosamine synthase activity (GO:0003945)N-acetyllactosamine synthase activity (GO:0003945)UDP-galactosyltransferase activity (GO:0035250)UDP-galactosyltransferase activity (GO:0035250)alpha-tubulin binding (GO:0043014)azurophil granule membrane (GO:0035577)basolateral plasma membrane (GO:0016323)beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity (GO:0003831)beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity (GO:0003831)beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity (GO:0003831)beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity (GO:0003831)beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity (GO:0003831)beta-tubulin binding (GO:0048487)brush border membrane (GO:0031526)carbohydrate metabolic process (GO:0005975)cell surface (GO:0009986)desmosome (GO:0030057)external side of plasma membrane (GO:0009897)extracellular exosome (GO:0070062)extracellular region (GO:0005576)extracellular region (GO:0005576)filopodium (GO:0030175)galactosyltransferase activity (GO:0008378)galactosyltransferase activity (GO:0008378)glycosyltransferase activity (GO:0016757)identical protein binding (GO:0042802)lactose biosynthetic process (GO:0005989)lactose biosynthetic process (GO:0005989)lactose synthase activity (GO:0004461)lactose synthase activity (GO:0004461)lactose synthase activity (GO:0004461)lipid metabolic process (GO:0006629)manganese ion binding (GO:0030145)membrane (GO:0016020)oligosaccharide biosynthetic process (GO:0009312)oligosaccharide biosynthetic process (GO:0009312)plasma membrane (GO:0005886)plasma membrane (GO:0005886)positive regulation of circulating fibrinogen levels (GO:0061755)protein N-linked glycosylation (GO:0006487)protein N-linked glycosylation (GO:0006487)protein-containing complex (GO:0032991)secretory granule membrane (GO:0030667)
Expression (TPM)
B4GALT1 — as a Regulated Gene

TFs regulating B4GALT1 0 TFs

Transcription factors with Perturb-seq knockdown data for B4GALT1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = B4GALT1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to B4GALT1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of B4GALT1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr9:32,950,445–32,951,255 216.5 kb Distal (>10kb) Multiome 12
chr9:33,000,845–33,002,021 165.7 kb Distal (>10kb) Multiome 802
chr9:33,024,523–33,026,243 142.0 kb Distal (>10kb) Multiome 972
chr9:33,044,108–33,044,981 122.8 kb Distal (>10kb) Multiome 451
chr9:33,076,221–33,076,965 90.6 kb Distal (>10kb) Multiome 804
chr9:33,166,320–33,168,338 42 bp At TSS Multiome 849
chr9:33,171,750–33,173,178 5.3 kb Proximal (<10kb) Multiome 359
chr9:33,264,068–33,265,475 97.5 kb Distal (>10kb) Multiome 790
chr9:33,267,199–33,267,770 100.1 kb Distal (>10kb) Multiome 106
chr9:33,290,056–33,291,152 123.1 kb Distal (>10kb) Multiome 1075
chr9:33,381,203–33,381,714 214.2 kb Distal (>10kb) Multiome 134
chr9:33,415,341–33,415,979 248.3 kb Distal (>10kb) Multiome 774
chr9:33,447,056–33,448,058 280.3 kb Distal (>10kb) Multiome 547
chr9:33,452,742–33,453,295 285.7 kb Distal (>10kb) Multiome 374

Genome Browser

Genomic view of the B4GALT1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr9:32,940,445 – 33,463,295
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq