chr9 : 19,967,955 – 19,968,399
444 bp 113 TFs 1 linked gene
This 444 bp open chromatin element is linked to ENSG00000277711 and is bound by 113 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000277711 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:19,962,955 – 19,973,399
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
113 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 299 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 238 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 228 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 294 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 237 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 245 bp overlap
BRD4 1 dataset
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 237 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 179 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 333 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 257 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 109 bp overlap
CTCF 22 datasets
ChIP B cell ENCFF506FKC 221 bp overlap
ChIP H9 ENCFF152GTF 242 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 88 bp overlap
ChIP PC-3 ENCFF487TUI 66 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 65 bp overlap
ChIP RWPE2 ENCFF911IEE 190 bp overlap
ChIP VCaP ENCFF858YQT 104 bp overlap
ChIP brain ENCFF099ASU 100 bp overlap
ChIP brain ENCFF099ASU 301 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 74 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 81 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 82 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 283 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 120 bp overlap
ChIP endodermal cell ENCFF471YCZ 66 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 153 bp overlap
ChIP heart left ventricle ENCFF185CKY 51 bp overlap
ChIP heart right ventricle ENCFF022KFI 78 bp overlap
ChIP heart right ventricle ENCFF027ORH 236 bp overlap
ChIP heart right ventricle ENCFF979TCT 60 bp overlap
ChIP thyroid gland ENCFF300RYK 78 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 80 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 294 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 147 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 246 bp overlap
ChIP hESC GSE17917.EP300.hESC 305 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 363 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 223 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 351 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GCM2 1 dataset
Motif DE_12h DE_12h-GCM2_MA0767.2 8 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 330 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 297 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 210 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 248 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 168 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 273 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 444 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 444 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 169 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 444 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 444 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 444 bp overlap
ChIP hESC GSE18292.NANOG.hESC 130 bp overlap
ChIP hESC GSE20650.NANOG.hESC 289 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 197 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 186 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 223 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 296 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 12 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 444 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 412 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 444 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 209 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 360 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 343 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 210 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 444 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 304 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 326 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 167 bp overlap
Pparg::Rxra 1 dataset
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 270 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RORB 1 dataset
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 444 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 359 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 149 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 242 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 83 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 313 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 444 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 444 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 444 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 444 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 444 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 444 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 63 bp overlap
SOX13 1 dataset
Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX2 8 datasets
Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap
ChIP H9 GSE46837.SOX2.H9 256 bp overlap
ChIP LK2 GSE137459.SOX2.LK2 294 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 318 bp overlap
ChIP hESC GSE69479.SOX2.hESC 254 bp overlap
ChIP hESC GSE18292.SOX2.hESC 130 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 369 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 290 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SP1 4 datasets
ChIP H1 ENCFF263FUH 258 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 314 bp overlap
ChIP WTC11 ENCFF688PEU 435 bp overlap
ChIP WTC11 ENCFF688PEU 232 bp overlap
STAT1::STAT2 1 dataset
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 268 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 135 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 314 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 378 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 290 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 220 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
ZBTB16 1 dataset
ChIP KG-1_shEZH2 GSE109619.ZBTB16.KG-1_shEZH2 180 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 326 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 103 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 139 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 314 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 251 bp overlap
ZNF513 2 datasets
ChIP HEK293 ENCFF457TCC 405 bp overlap
ChIP HEK293 ENCSR503DPC.ZNF513.HEK293 274 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 218 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
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