chr9 : 14,301,620 14,302,120
500 bp 104 TFs 0 linked genes
This 500 bp open chromatin element has no linked target genes and is bound by 104 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:14,296,620 – 14,307,120
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
AR 11 datasets
ChIP LNCaP GSE110655.AR.LNCaP 244 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 325 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 206 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 204 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 284 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 208 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 149 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 205 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 168 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 226 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 202 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 389 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 322 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 240 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 202 bp overlap
BRD4 5 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 178 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 386 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 194 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 224 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 180 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 141 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 345 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 223 bp overlap
E2F7 1 dataset
Motif DE_36h DE_36h-E2F7_MA0758.1 14 bp overlap
EHMT2 1 dataset
ChIP Rh41 GSE118666.EHMT2.Rh41 254 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 346 bp overlap
EP300 3 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 266 bp overlap
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 325 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE41561.ESR1.MCF-7 149 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 475 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 160 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 331 bp overlap
FOXA1 7 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 171 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 139 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 54 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 189 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 147 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 170 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 241 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 475 bp overlap
ChIP DE DE-FOXA2-2 500 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 286 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 211 bp overlap
FOXC1 1 dataset
Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
GATA1 2 datasets
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 60 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA2 7 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 191 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 270 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 323 bp overlap
ChIP SK-N-SH ENCFF764OZD 400 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 342 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 204 bp overlap
GATA3 3 datasets
ChIP BE2C GSE65664.GATA3.BE2C 284 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 243 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 500 bp overlap
ChIP DE DE-GATA4-2 500 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 458 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 480 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 396 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 299 bp overlap
ChIP DE DE-GATA6-1 500 bp overlap
ChIP DE DE-GATA6-2 500 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 500 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 500 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 500 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 500 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 500 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 500 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 287 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 459 bp overlap
ChIP foregut GSE117136.GATA6.foregut 347 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 409 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 278 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 428 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 173 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 232 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 297 bp overlap
HNF4A 4 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 220 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 133 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 353 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 294 bp overlap
HOXB13 1 dataset
ChIP LNCaP GSE56288.HOXB13.LNCaP 282 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 432 bp overlap
Hmx2 1 dataset
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 225 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 227 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 170 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 231 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 180 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 212 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 219 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 449 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 159 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 159 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 247 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 238 bp overlap
MYNN 1 dataset
ChIP HEK293 GSE76494.MYNN.HEK293 143 bp overlap
MYOG 2 datasets
ChIP RH4 GSE83726.MYOG.RH4 317 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 299 bp overlap
Mecom 3 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 94 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 293 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 270 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 237 bp overlap
NEUROG2 1 dataset
Motif DE_36h DE_36h-NEUROG2_MA0669.1 10 bp overlap
NR1I3 1 dataset
Motif DE_36h DE_36h-NR1I3_MA1534.2 8 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 219 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 154 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 339 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 234 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 197 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 500 bp overlap
POLR2A 2 datasets
ChIP body of pancreas ENCFF727UBE 238 bp overlap
ChIP stomach ENCFF820WZN 345 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 390 bp overlap
Prdm5 1 dataset
Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 125 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 400 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 298 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 387 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 180 bp overlap
RXRA 4 datasets
ChIP Hep-G2 ENCSR000BHU.RXRA.Hep-G2 172 bp overlap
ChIP HepG2 ENCFF204YVO 297 bp overlap
ChIP liver ENCFF077DAP 430 bp overlap
ChIP liver ENCFF807CIA 181 bp overlap
RXRB 1 dataset
ChIP HepG2 ENCFF539ZAY 396 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 442 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 500 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 367 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 329 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 500 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 293 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 500 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 491 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 197 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 61 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 246 bp overlap
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 279 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 57 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 470 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 500 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 357 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 248 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 392 bp overlap
SOX21 1 dataset
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 500 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 340 bp overlap
SS18 3 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 485 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 500 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 500 bp overlap
TEAD1 2 datasets
ChIP MSTO GSE68170.TEAD1.MSTO 241 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 210 bp overlap
THRA 1 dataset
ChIP HepG2 ENCFF025KMX 385 bp overlap
THRB 3 datasets
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 306 bp overlap
ChIP HepG2 ENCFF476INC 404 bp overlap
TRPS1 3 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
ChIP MCF-7 GSE133072.TRPS1.MCF-7 300 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH ENCFF182EBB 344 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 170 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 311 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 209 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 414 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 318 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 335 bp overlap
ZNF263 3 datasets
ChIP HEK293 ENCFF336CWQ 216 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 238 bp overlap
ChIP HepG2 ENCFF626SSV 358 bp overlap
ZNF274 1 dataset
Motif DE_36h DE_36h-ZNF274_MA1592.2 12 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 104 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 105 bp overlap
ZNF652 2 datasets
Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 128 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 220 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 166 bp overlap
ZNF75A 2 datasets
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 445 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 295 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 188 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 471 bp overlap