chr9 : 14,274,173 14,275,115
942 bp 81 TFs 0 linked genes
This 942 bp open chromatin element has no linked target genes and is bound by 81 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:14,269,173 – 14,280,115
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 321 bp overlap
ChIP HAP1 GSE108387.ARID1A.HAP1 445 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 249 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 666 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 184 bp overlap
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
BCL6 2 datasets
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 121 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 436 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 211 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 60 bp overlap
BRD4 5 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 454 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 197 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 247 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 268 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 280 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 287 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 378 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 436 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 215 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 207 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 391 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 361 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 242 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 102 bp overlap
GATA2 9 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 140 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 163 bp overlap
ChIP SK-N-SH ENCFF764OZD 94 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 138 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 275 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 220 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 370 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 353 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 420 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 285 bp overlap
ChIP SH-SY5Y ENCFF475HYF 366 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 257 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 163 bp overlap
ChIP SK-N-SH ENCFF040SSB 143 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-2 295 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 70 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 306 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 279 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 266 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 444 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 326 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 200 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 444 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 495 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCFF518OXG 371 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 266 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 209 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 324 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 398 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 303 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 374 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 152 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 310 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 528 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 285 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 216 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 222 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 704 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 190 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 812 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 606 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 382 bp overlap
NEUROD1 2 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 458 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 385 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 268 bp overlap
PITX3 2 datasets
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 567 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 247 bp overlap
POLR2A 3 datasets
ChIP PFSK-1 ENCFF576NIT 122 bp overlap
ChIP sigmoid colon ENCFF653CQA 425 bp overlap
ChIP thyroid gland ENCFF979LRR 491 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 269 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 557 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 349 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 247 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 443 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 349 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 397 bp overlap
PSIP1 2 datasets
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 164 bp overlap
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 350 bp overlap
RAD21 3 datasets
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 298 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 182 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 406 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 155 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 60 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 300 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 218 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 119 bp overlap
SIX2 3 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 374 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 304 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 128 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 177 bp overlap
SMARCA2 6 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 614 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 457 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 361 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 522 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 606 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 599 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 426 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 738 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 636 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 550 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 548 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 429 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 306 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 329 bp overlap
SMARCC1 5 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 295 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 279 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 373 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 480 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 399 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 166 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 251 bp overlap
SPI1 1 dataset
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 118 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 139 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 126 bp overlap
TEAD1 2 datasets
ChIP CCLP1 GSE62272.TEAD1.CCLP1 143 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 176 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 297 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 521 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 254 bp overlap
ZIM3 1 dataset
ChIP HEK293T GSE78099.ZIM3.HEK293T 469 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 229 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCFF436CGE 76 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 334 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 433 bp overlap
ZNF429 1 dataset
ChIP HEK293T GSE78099.ZNF429.HEK293T 67 bp overlap
ZNF449 3 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ChIP HEK293 ENCFF764ZIC 319 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 498 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 173 bp overlap
ZNF768 1 dataset
ChIP HEK293 ENCFF579QSI 337 bp overlap
ZSCAN4 3 datasets
ChIP HEK293 ENCFF381BKT 294 bp overlap
ChIP HEK293 ENCFF381BKT 117 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 372 bp overlap