chr1 : 159,823,334 159,823,794
460 bp 114 TFs 0 linked genes
This 460 bp open chromatin element has no linked target genes and is bound by 114 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:159,818,334 – 159,828,794
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
114 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap
ASCL1 4 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 224 bp overlap
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 261 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 253 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 235 bp overlap
Alx1 1 dataset
Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BCL11A 1 dataset
ChIP MCF-10A ERP003925.BCL11A.MCF-10A 202 bp overlap
BRD4 8 datasets
ChIP MCF-10A ERP003925.BRD4.MCF-10A 306 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 460 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 52 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 357 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 301 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 310 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 350 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 217 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 212 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 182 bp overlap
CREBBP 1 dataset
ChIP LS180 GSE39277.CREBBP.LS180 102 bp overlap
CTCF 1 dataset
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 211 bp overlap
CTNNB1 3 datasets
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 150 bp overlap
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 261 bp overlap
ChIP hiPSC_TT-neg_D2 GSE132532.CTNNB1.hiPSC_TT-neg_D2 223 bp overlap
DRGX 1 dataset
Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap
EMX1 1 dataset
Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 245 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000AUQ.EP300.WA01 117 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 392 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 246 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 316 bp overlap
ESX1 1 dataset
Motif DE_12h DE_12h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap
EZH2 3 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 226 bp overlap
ChIP keratinocyte ENCFF070STK 460 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 195 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 208 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 311 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 399 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 373 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 273 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 365 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 384 bp overlap
GSX1 1 dataset
Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 364 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 144 bp overlap
HOXA1 1 dataset
Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap
HOXB2 1 dataset
Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
ISX 1 dataset
Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 442 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 405 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 213 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KLF5 6 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
ChIP ESO-26 GSE132680.KLF5.ESO-26 460 bp overlap
ChIP GP5D GSE51234.KLF5.GP5D 184 bp overlap
ChIP HCC95_E419Q GSE88976.KLF5.HCC95_E419Q 202 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 329 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 277 bp overlap
LHX6 1 dataset
Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap
LMX1A 1 dataset
Motif DE_12h DE_12h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_12h DE_12h-LMX1B_MA0703.3 8 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Lhx4 1 dataset
Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 460 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 460 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 273 bp overlap
MIXL1 1 dataset
Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 423 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 321 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 280 bp overlap
MYC 3 datasets
ChIP GP5D GSE51234.MYC.GP5D 229 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 336 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 443 bp overlap
MYCN 2 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 232 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 135 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 319 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 258 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 423 bp overlap
ChIP NCI-H524 GSE69394.NEUROD1.NCI-H524 142 bp overlap
NEUROG2 6 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 330 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 372 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 368 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 297 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 295 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 333 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 322 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 302 bp overlap
NOTO 1 dataset
Motif DE_12h DE_12h-NOTO_MA0710.2 7 bp overlap
NR1I2 1 dataset
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
PAX4 1 dataset
Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 399 bp overlap
PDX1 1 dataset
Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 156 bp overlap
POLR2A 2 datasets
ChIP transverse colon ENCFF607LKE 371 bp overlap
ChIP transverse colon ENCFF610RWV 425 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 245 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 136 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 368 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 224 bp overlap
PRRX1 1 dataset
Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 179 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 268 bp overlap
RAX2 1 dataset
Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 119 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SHOX 1 dataset
Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 169 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 188 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 324 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 398 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 381 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 289 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 344 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 366 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 247 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 250 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 202 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 253 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 171 bp overlap
SOX4 1 dataset
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 220 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SUZ12 1 dataset
ChIP K562 ENCFF397TBJ 425 bp overlap
Shox2 1 dataset
Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 284 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 264 bp overlap
TCF4 3 datasets
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 299 bp overlap
ChIP LS180 GSE31939.TCF4.LS180 154 bp overlap
ChIP LS180_125 GSE31939.TCF4.LS180_125 110 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 4 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 272 bp overlap
ChIP HeLa-S3 ENCFF673QAB 437 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 357 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 441 bp overlap
TLX2 1 dataset
Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap
USF1 3 datasets
ChIP K-562 ENCSR000BKT.USF1.K-562 73 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 84 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 96 bp overlap
VAX1 1 dataset
Motif DE_12h DE_12h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_12h DE_12h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_12h DE_12h-VSX2_MA0726.2 7 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 155 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 271 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 316 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 238 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 460 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 414 bp overlap
mix-a 1 dataset
Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap