chr1 : 156,422,414 156,422,994
580 bp 74 TFs 2 linked genes
This 580 bp open chromatin element is linked to MIR9-1 and MIR9-1HG and is bound by 74 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
MIR9-1 2.0 kb Proximal Proximity
MIR9-1HG 2.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:156,417,414 – 156,427,994
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
ARID1A 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 287 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 180 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 92 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 266 bp overlap
ATF3 6 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 136 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 154 bp overlap
ChIP K-562 ENCSR000BNU.ATF3.K-562 116 bp overlap
ChIP K562 ENCFF604FPV 130 bp overlap
ChIP K562 ENCFF921JQW 299 bp overlap
ChIP K562 ENCFF965VXT 133 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_BCL11A-ER-V5 GSE103445.BCL11A.HUDEP-2_BCL11A-ER-V5 86 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 280 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 556 bp overlap
BRD4 4 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 94 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 217 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 195 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 269 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 225 bp overlap
CEBPB 4 datasets
ChIP HeLa-S3 ENCFF722WEG 97 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 88 bp overlap
ChIP K562 ENCFF189VBN 90 bp overlap
ChIP K562 ENCFF584CTB 221 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 153 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 114 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF262VBH 144 bp overlap
ChIP BLaER1 ENCFF274GAT 325 bp overlap
ChIP BLaER1 ENCFF460KDD 412 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 351 bp overlap
ESR1 15 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 195 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 196 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 229 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 151 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 160 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 267 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 379 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 434 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 270 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 266 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 273 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 306 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 141 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 339 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 260 bp overlap
EZH2 11 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 418 bp overlap
ChIP GM23248 ENCFF404ZHM 96 bp overlap
ChIP H1 ENCFF232NZA 580 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 373 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 415 bp overlap
ChIP T98G GSE112240.EZH2.T98G 250 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 151 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 580 bp overlap
ChIP keratinocyte ENCFF070STK 351 bp overlap
ChIP neural progenitor cell ENCFF018MKA 504 bp overlap
ChIP neural progenitor cell ENCFF472NFV 580 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCFF282FWZ 236 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 186 bp overlap
FOSL1 1 dataset
ChIP HCT116 ENCFF540ZXN 295 bp overlap
FOXK1 1 dataset
ChIP K562 ENCFF801IBC 138 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 326 bp overlap
ChIP DE DE-GATA4-2 442 bp overlap
ChIP foregut GSE117136.GATA4.foregut 415 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 245 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 312 bp overlap
ChIP DE DE-GATA6-2 512 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 314 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 103 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 410 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 463 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 515 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 580 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 554 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 580 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 127 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 500 bp overlap
ChIP foregut GSE117136.GATA6.foregut 379 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 522 bp overlap
GRHL2 3 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 237 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 555 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 465 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 247 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 575 bp overlap
ChIP K562 ENCFF771OHZ 487 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 409 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 348 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 379 bp overlap
JUN 4 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 376 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 310 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 519 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 195 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 119 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 260 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 490 bp overlap
MED1 2 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 332 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 363 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 526 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 154 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 73 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 229 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 156 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 200 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 365 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 386 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 200 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 236 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 429 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 66 bp overlap
RNF2 3 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 459 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 137 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 170 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 83 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 219 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 192 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 549 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 247 bp overlap
SMAD3 3 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 366 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 383 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 336 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 580 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 122 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 63 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 314 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 281 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 411 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 55 bp overlap
STAT3 3 datasets
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 256 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 108 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 310 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 580 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 273 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 193 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 112 bp overlap
TAL1 1 dataset
ChIP K-562 GSE107726.TAL1.K-562 166 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 78 bp overlap
TEAD4 5 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 390 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 204 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 153 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 265 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 445 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 154 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 229 bp overlap
TP53 1 dataset
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 220 bp overlap
XRCC5 2 datasets
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 146 bp overlap
ChIP K-562 GSE120104.XRCC5.K-562 146 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 228 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 454 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 161 bp overlap
ChIP K562 ENCFF795CMH 245 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 247 bp overlap
ZNF263 5 datasets
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 170 bp overlap
ChIP HepG2 ENCFF626SSV 226 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 438 bp overlap
ChIP K562 ENCFF640RNA 117 bp overlap
ChIP WTC11 ENCFF893RTM 187 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 153 bp overlap