Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for MIR9-1HG. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MIR9-1HG upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MIR9-1HG, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:156,123,520–156,124,091 | 297.9 kb | Distal (>10kb) Multiome | 679 | |
| chr1:156,129,945–156,130,610 | 291.3 kb | Distal (>10kb) Multiome | 733 | |
| chr1:156,146,058–156,146,760 | 275.4 kb | Distal (>10kb) Multiome | 429 | |
| chr1:156,149,593–156,150,242 | 271.7 kb | Distal (>10kb) Multiome | 194 | |
| chr1:156,160,602–156,161,218 | 260.7 kb | Distal (>10kb) Multiome | 218 | |
| chr1:156,181,487–156,182,119 | 240.0 kb | Distal (>10kb) Multiome | 145 | |
| chr1:156,184,002–156,185,155 | 237.3 kb | Distal (>10kb) Multiome | 216 | |
| chr1:156,193,531–156,194,375 | 227.8 kb | Distal (>10kb) Multiome | 751 | |
| chr1:156,212,611–156,213,686 | 208.6 kb | Distal (>10kb) Multiome | 893 | |
| chr1:156,245,413–156,246,269 | 176.0 kb | Distal (>10kb) Multiome | 380 | |
| chr1:156,282,165–156,283,323 | 138.9 kb | Distal (>10kb) Multiome | 973 | |
| chr1:156,291,233–156,291,857 | 130.2 kb | Distal (>10kb) Multiome | 518 | |
| chr1:156,337,825–156,339,056 | 83.3 kb | Distal (>10kb) Multiome | 836 | |
| chr1:156,356,873–156,357,393 | 64.7 kb | Distal (>10kb) Multiome HiCAR | 506 | |
| chr1:156,368,893–156,369,552 | 52.5 kb | Distal (>10kb) Multiome HiCAR | 529 | |
| chr1:156,419,640–156,420,543 | at TSS | At TSS | 236 | |
| chr1:156,420,712–156,422,291 | 7 bp | At TSS Multiome | 569 | |
| chr1:156,422,414–156,422,994 | 2.1 kb | Proximal (<10kb) | 74 | |
| chr1:156,427,079–156,427,507 | 6.8 kb | Proximal (<10kb) | 12 | |
| chr1:156,428,917–156,429,153 | 8.6 kb | Proximal (<10kb) | 16 | |
| chr1:156,429,277–156,430,847 | 8.1 kb | Proximal (<10kb) Multiome | 231 | |
| chr1:156,432,112–156,432,986 | 10.9 kb | Distal (>10kb) Multiome | 50 | |
| chr1:156,436,199–156,436,514 | 6.8 kb | Proximal (<10kb) | 138 | |
| chr1:156,439,076–156,440,265 | 18.2 kb | Distal (>10kb) Multiome | 264 | |
| chr1:156,456,348–156,457,982 | 35.0 kb | Distal (>10kb) Multiome | 1033 | |
| chr1:156,499,927–156,501,599 | 79.2 kb | Distal (>10kb) Multiome | 950 | |
| chr1:156,504,626–156,505,685 | 83.6 kb | Distal (>10kb) Multiome | 911 | |
| chr1:156,572,298–156,572,749 | 150.8 kb | Distal (>10kb) Multiome | 580 | |
| chr1:156,583,883–156,584,356 | 162.3 kb | Distal (>10kb) Multiome | 183 | |
| chr1:156,591,252–156,592,285 | 170.0 kb | Distal (>10kb) Multiome | 706 | |
| chr1:156,601,188–156,601,796 | 179.7 kb | Distal (>10kb) Multiome | 759 | |
| chr1:156,624,123–156,624,848 | 202.8 kb | Distal (>10kb) Multiome | 472 | |
| chr1:156,641,772–156,642,623 | 220.3 kb | Distal (>10kb) Multiome | 211 | |
| chr1:156,657,279–156,657,727 | 235.8 kb | Distal (>10kb) Multiome | 357 | |
| chr1:156,659,788–156,660,816 | 238.4 kb | Distal (>10kb) Multiome | 901 | |
| chr1:156,673,575–156,674,145 | 252.1 kb | Distal (>10kb) Multiome | 269 | |
| chr1:156,676,488–156,677,779 | 255.6 kb | Distal (>10kb) Multiome | 449 | |
| chr1:156,689,084–156,690,144 | 267.9 kb | Distal (>10kb) Multiome | 508 | |
| chr1:156,692,653–156,693,825 | 271.4 kb | Distal (>10kb) Multiome | 493 | |
| chr1:156,703,427–156,704,626 | 282.2 kb | Distal (>10kb) Multiome | 182 | |
| chr1:156,704,839–156,707,238 | 284.4 kb | Distal (>10kb) Multiome | 728 | |
| chr1:156,708,331–156,708,813 | 286.7 kb | Distal (>10kb) Multiome | 108 | |
| chr1:156,728,152–156,729,282 | 307.0 kb | Distal (>10kb) Multiome | 815 | |
| chr1:156,740,482–156,741,987 | 319.5 kb | Distal (>10kb) Multiome | 1012 | |
| chr1:156,746,390–156,748,386 | 325.5 kb | Distal (>10kb) Multiome | 750 | |
| chr1:156,751,012–156,752,594 | 330.1 kb | Distal (>10kb) Multiome | 869 |
Genomic view of the MIR9-1HG locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.