chr6 : 131,917,888 – 131,918,061

173 bp 98 TFs 1 linked gene

This 173 bp open chromatin element is linked to LINC01013 and is bound by 98 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC01013		7.7 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

98 transcription factors

AR 1 dataset

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 108 bp overlap

Ascl2 1 dataset

Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap

BCL6 1 dataset

ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 173 bp overlap

BHLHE22 1 dataset

Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap

BRD4 8 datasets

ChIP MM1-S GSE45984.BRD4.MM1-S 173 bp overlap

ChIP MM1-S GSE43743.BRD4.MM1-S 173 bp overlap

ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 173 bp overlap

ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 148 bp overlap

ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 173 bp overlap

ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 137 bp overlap

ChIP SEM GSE83671.BRD4.SEM 166 bp overlap

ChIP SW480 GSE110473.BRD4.SW480 73 bp overlap

CASZ1 1 dataset

ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 173 bp overlap

CHD2 1 dataset

ChIP WA01 ENCSR000EBT.CHD2.WA01 147 bp overlap

CREB1 1 dataset

ChIP WA01 ENCSR000BSN.CREB1.WA01 131 bp overlap

CTCF 17 datasets

Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap

Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap

ChIP GM04648 GSE148179.CTCF.GM04648 173 bp overlap

ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 92 bp overlap

ChIP HepG2 ENCFF348BUL 170 bp overlap

ChIP HepG2 ENCFF757EKU 173 bp overlap

ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 111 bp overlap

ChIP Loucy ENCSR464DKE.CTCF.Loucy 172 bp overlap

ChIP MCF-7 ENCFF424NQR 165 bp overlap

ChIP MM.1S ENCFF869JMQ 131 bp overlap

ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 173 bp overlap

ChIP MM1-S GSE43743.CTCF.MM1-S 159 bp overlap

ChIP OCI-LY7 ENCFF086AXQ 173 bp overlap

ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 173 bp overlap

ChIP RH4 GSE83726.CTCF.RH4 173 bp overlap

ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 132 bp overlap

ChIP WERI-Rb-1 ENCFF349QKF 173 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 173 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 173 bp overlap

EBF1 2 datasets

ChIP MUTUL GSE75503.EBF1.MUTUL 173 bp overlap

ChIP NALM-6 GSE126300.EBF1.NALM-6 173 bp overlap

EHF 1 dataset

Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap

ELF1 2 datasets

Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap

ChIP Hep-G2 ENCSR000BMZ.ELF1.Hep-G2 112 bp overlap

ELF2 1 dataset

Motif ES_0h ES_0h-ELF2_MA1483.3 10 bp overlap

ELF3 1 dataset

Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap

ELK1 1 dataset

Motif ES_0h ES_0h-ELK1_MA0028.3 9 bp overlap

ELK1::HOXA1 1 dataset

Motif ES_0h ES_0h-ELK1HOXA1_MA1931.1 14 bp overlap

ELK4 1 dataset

Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap

EP300 1 dataset

ChIP 697 GSE138031.EP300.697 129 bp overlap

ERF 1 dataset

Motif ES_0h ES_0h-ERF_MA0760.2 9 bp overlap

ERF::SREBF2 1 dataset

Motif ES_0h ES_0h-ERFSREBF2_MA1939.2 16 bp overlap

ERG 2 datasets

ChIP SEM GSE117864.ERG.SEM 163 bp overlap

ChIP WTC11 ENCFF011YUL 102 bp overlap

ETS1 1 dataset

Motif ES_0h ES_0h-ETS1_MA0098.4 9 bp overlap

ETS2 1 dataset

Motif ES_0h ES_0h-ETS2_MA1484.2 9 bp overlap

ETV1 1 dataset

Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap

ETV2 1 dataset

Motif ES_0h ES_0h-ETV2_MA0762.2 9 bp overlap

ETV2::FOXI1 1 dataset

Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV3 1 dataset

Motif ES_0h ES_0h-ETV3_MA0763.2 9 bp overlap

ETV4 1 dataset

Motif ES_0h ES_0h-ETV4_MA0764.4 9 bp overlap

ETV5::DRGX 1 dataset

Motif ES_0h ES_0h-ETV5DRGX_MA1944.2 12 bp overlap

EZH2 1 dataset

ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 155 bp overlap

Elf5 1 dataset

Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap

Erg 1 dataset

Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap

FEV 1 dataset

Motif ES_0h ES_0h-FEV_MA0156.4 9 bp overlap

FLI1 2 datasets

Motif ES_0h ES_0h-FLI1_MA0475.3 9 bp overlap

ChIP SEM GSE117864.FLI1.SEM 173 bp overlap

FLI1::DRGX 1 dataset

Motif ES_0h ES_0h-FLI1DRGX_MA1949.2 14 bp overlap

FOXJ2::ELF1 1 dataset

Motif ES_0h ES_0h-FOXJ2ELF1_MA1952.2 11 bp overlap

FOXO1 1 dataset

ChIP CD34 GSE80773.FOXO1.CD34 80 bp overlap

GABPA 1 dataset

Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap

GATA6 3 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 124 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 131 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 173 bp overlap

GTF2F1 1 dataset

ChIP WA01 ENCSR000EBP.GTF2F1.WA01 154 bp overlap

HDAC2 1 dataset

ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 173 bp overlap

HOXB2::ELK1 1 dataset

Motif ES_0h ES_0h-HOXB2ELK1_MA1957.1 14 bp overlap

HOXB4 1 dataset

Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap

Hnf1A 1 dataset

Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap

IKZF1 3 datasets

ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 158 bp overlap

Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 173 bp overlap

IKZF2 1 dataset

Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap

IKZF3 1 dataset

ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 173 bp overlap

Ikzf3 1 dataset

Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap

JUN 2 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 54 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 80 bp overlap

JUND 2 datasets

ChIP H1 ENCFF468JZD 173 bp overlap

ChIP WA01 ENCSR000BKP.JUND.WA01 125 bp overlap

KMT2A 1 dataset

ChIP L826 GSE83671.KMT2A.L826 173 bp overlap

KMT2B 1 dataset

ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 81 bp overlap

Lef1 2 datasets

Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap

MAX 1 dataset

ChIP WTC11 ENCFF223QFY 173 bp overlap

MED 1 dataset

ChIP SEM GSE83671.MED.SEM 163 bp overlap

MED1 1 dataset

ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 108 bp overlap

MEIS1 1 dataset

Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap

MSC 1 dataset

Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap

MTA2 1 dataset

ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 173 bp overlap

MYB 2 datasets

ChIP DU528 GSE94000.MYB.DU528 151 bp overlap

ChIP SEM GSE117864.MYB.SEM 173 bp overlap

MYOD1 7 datasets

ChIP RD GSE137168.MYOD1.RD 173 bp overlap

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 173 bp overlap

ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 173 bp overlap

ChIP RH4 GSE83726.MYOD1.RH4 173 bp overlap

ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 173 bp overlap

ChIP myoblast GSE50413.MYOD1.myoblast 136 bp overlap

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 173 bp overlap

NANOG 4 datasets

ChIP WA01 ERP004238.NANOG.WA01 173 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 136 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 141 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 173 bp overlap

NR3C1 2 datasets

ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 166 bp overlap

ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 173 bp overlap

Nanog 1 dataset

Motif ES_0h ES_0h-Nanog_MA2339.1 7 bp overlap

Neurod2 1 dataset

Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap

Nr1h3::Rxra 1 dataset

Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap

Olig2 1 dataset

Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap

PAX5 2 datasets

ChIP NALM-6 GSE115764.PAX5.NALM-6 148 bp overlap

ChIP NALM-6 GSE126300.PAX5.NALM-6 61 bp overlap

PBX1 1 dataset

ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 173 bp overlap

PBX1-2-3 1 dataset

ChIP 697 GSE138031.PBX1-2-3.697 107 bp overlap

POU2F1 2 datasets

ChIP HepG2 ENCFF422JZU 173 bp overlap

ChIP IMR-90_TERT GSE38303.POU2F1.IMR-90_TERT 153 bp overlap

POU2F2 1 dataset

ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 173 bp overlap

PROX1 1 dataset

ChIP SW480 GSE60390.PROX1.SW480 134 bp overlap

RAD21 1 dataset

ChIP RH4 GSE83726.RAD21.RH4 141 bp overlap

RUNX1 3 datasets

ChIP 697 GSE138031.RUNX1.697 170 bp overlap

ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 173 bp overlap

ChIP NALM-6 GSE126300.RUNX1.NALM-6 173 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 130 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 173 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 173 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 173 bp overlap

SPI1 4 datasets

ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 164 bp overlap

ChIP RS4-11 GSE71616.SPI1.RS4-11 159 bp overlap

ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 173 bp overlap

ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 167 bp overlap

SPIB 1 dataset

Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap

TAL1::TCF3 1 dataset

Motif ES_0h ES_0h-TAL1TCF3_MA0091.2 10 bp overlap

TCF3 2 datasets

ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 173 bp overlap

ChIP SEM GSE85988.TCF3.SEM 167 bp overlap

TCF4 1 dataset

ChIP CAL-1 GSE76147.TCF4.CAL-1 130 bp overlap

TCF7 1 dataset

Motif ES_0h ES_0h-TCF7_MA0769.3 7 bp overlap

TCF7L1 1 dataset

Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 2 datasets

Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap

ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 136 bp overlap

TFAP4 3 datasets

Motif ES_0h ES_0h-TFAP4_MA0691.1 10 bp overlap

ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 149 bp overlap

ChIP HepG2 ENCFF030SRU 173 bp overlap

Tcf12 1 dataset

Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap

Tcf21 1 dataset

Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap

Twist2 1 dataset

Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap

ZBTB11 1 dataset

Motif ES_0h ES_0h-ZBTB11_MA2329.1 9 bp overlap

ZBTB7A 1 dataset

Motif ES_0h ES_0h-ZBTB7A_MA0750.3 9 bp overlap

ZMAT4 1 dataset

ChIP WTC11 ENCFF608UXZ 173 bp overlap

ZNF175 1 dataset

Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap

ZNF549 1 dataset

Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap

Zbtb2 1 dataset

Motif ES_0h ES_0h-Zbtb2_MA2340.1 10 bp overlap