chr6 : 108,167,353 108,167,892
539 bp 77 TFs 1 linked gene
This 539 bp open chromatin element is linked to NR2E1 and is bound by 77 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NR2E1 869 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:108,162,353 – 108,172,892
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 255 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 539 bp overlap
BRD4 2 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 375 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 219 bp overlap
CBX7 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 206 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 539 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 205 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 376 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 499 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 300 bp overlap
CTCF 2 datasets
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 335 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 338 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 114 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 267 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 158 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 212 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 539 bp overlap
ELK1 1 dataset
ChIP WA01 ERP002417.ELK1.WA01 477 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 358 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 114 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 410 bp overlap
EZH2 20 datasets
ChIP B cell ENCFF803EMO 316 bp overlap
ChIP DOHH2 ENCFF528GDC 192 bp overlap
ChIP GM23248 ENCFF404ZHM 248 bp overlap
ChIP GM23248 ENCFF404ZHM 455 bp overlap
ChIP GM23248 ENCFF506FWX 311 bp overlap
ChIP GM23338 ENCFF613YON 539 bp overlap
ChIP GM23338 ENCFF886DXX 480 bp overlap
ChIP H1 ENCFF232NZA 539 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 451 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 424 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 260 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 214 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 253 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 539 bp overlap
ChIP fibroblast of lung ENCFF479BAW 201 bp overlap
ChIP fibroblast of lung ENCFF479BAW 404 bp overlap
ChIP hepatocyte ENCFF118DKH 346 bp overlap
ChIP hepatocyte ENCFF552DZB 539 bp overlap
ChIP neural progenitor cell ENCFF018MKA 539 bp overlap
ChIP neural progenitor cell ENCFF472NFV 539 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 413 bp overlap
ChIP WTC11 ENCFF338WGC 435 bp overlap
GABPA 2 datasets
ChIP WA01 ENCSR000BIW.GABPA.WA01 217 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 229 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 451 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 539 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 539 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 539 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 539 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 421 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF353UJQ 259 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 311 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 314 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 271 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 168 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 129 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 539 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 539 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 539 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 219 bp overlap
KAT7 2 datasets
ChIP WTC11 ENCFF581TPB 470 bp overlap
ChIP WTC11 ENCFF581TPB 381 bp overlap
KDM1A 3 datasets
ChIP H1 ENCFF696SGD 504 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 275 bp overlap
ChIP K562 ENCFF128TYE 341 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 373 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 461 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 294 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 168 bp overlap
MYC 1 dataset
ChIP GEN2-2 GSE70275.MYC.GEN2-2 119 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 274 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 322 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 504 bp overlap
NANOG 2 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 103 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 390 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 365 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 330 bp overlap
PCGF2 3 datasets
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 183 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 127 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 58 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 243 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 379 bp overlap
ChIP neural cell ENCFF604SPB 385 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 374 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 539 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 464 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 531 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 539 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 228 bp overlap
PRDM15 2 datasets
ChIP WTC11 ENCFF108TMF 366 bp overlap
ChIP WTC11 ENCFF108TMF 372 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 378 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 497 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 298 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 539 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 63 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 142 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 322 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 218 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 244 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 287 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 281 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 120 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 213 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 372 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 370 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 538 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 539 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 493 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 539 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 310 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 539 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 90 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 375 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 338 bp overlap
SOX2 2 datasets
ChIP H9 GSE46837.SOX2.H9 142 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 183 bp overlap
SP1 3 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 112 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 363 bp overlap
ChIP WTC11 ENCFF688PEU 482 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 391 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 426 bp overlap
SUZ12 9 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 539 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 539 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 148 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 177 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 203 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 173 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 202 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 203 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 212 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 236 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 539 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 326 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 539 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 348 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 280 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 153 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 369 bp overlap