chr6 : 63,644,891 63,645,318
427 bp 110 TFs 1 linked gene
This 427 bp open chromatin element is linked to PHF3 and is bound by 110 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PHF3 9.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:63,639,891 – 63,650,318
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
110 transcription factors
Source
Cell type
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD2 2 datasets
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 162 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 219 bp overlap
CTCF 1 dataset
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 205 bp overlap
DPF2 1 dataset
ChIP SCCOHT-1 GSE117734.DPF2.SCCOHT-1 427 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 349 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOS 3 datasets
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 220 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 220 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL2 3 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
ChIP LPS141 GSE111253.FOSL2.LPS141 157 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 126 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 221 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 147 bp overlap
ISL2 2 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif DE_24h DE_24h-ISL2_MA0914.2 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 2 datasets
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 160 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 176 bp overlap
JUNB 2 datasets
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 163 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 176 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 356 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 225 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 211 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 177 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NKX2-1 2 datasets
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 168 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 281 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 249 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 81 bp overlap
Nkx3-2 2 datasets
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_24h DE_24h-Nkx3-2_MA0122.4 10 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 115 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 181 bp overlap
Prdm14 2 datasets
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 156 bp overlap
RELA 3 datasets
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 203 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 195 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 201 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 178 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 393 bp overlap
SMARCC1 1 dataset
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 427 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 113 bp overlap
SP7 3 datasets
ChIP HEK293 ENCFF733RBE 394 bp overlap
ChIP HEK293 ENCFF733RBE 191 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 384 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 7 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 185 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 63 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 147 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 279 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 160 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 157 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
Motif DE_24h DE_24h-THRB_MA1574.2 13 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 415 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
YY1AP1 1 dataset
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 77 bp overlap
ZBED2 1 dataset
Motif DE_12h DE_12h-ZBED2_MA1971.2 7 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 427 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 427 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 285 bp overlap
ZBTB6 2 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 154 bp overlap
ZBTB7A 1 dataset
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 427 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 427 bp overlap
ZEB2 3 datasets
ChIP HEK293 ENCFF847JIE 346 bp overlap
ChIP HEK293 ENCFF847JIE 427 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 418 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 212 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 229 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 400 bp overlap
ZNF35 2 datasets
Motif DE_12h DE_12h-ZNF35_MA2333.1 7 bp overlap
ChIP HEK293 GSE76494.ZNF35.HEK293 186 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 150 bp overlap
ZNF75A 2 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 2 datasets
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_24h DE_24h-ZNF75D_MA1601.2 12 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap