chr5 : 51,882,554 51,882,940
386 bp 94 TFs 0 linked genes
This 386 bp open chromatin element has no linked target genes and is bound by 94 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:51,877,554 – 51,887,940
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 134 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 305 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 230 bp overlap
Atf3 1 dataset
Motif ES_0h ES_0h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif ES_0h ES_0h-BACH1_MA1633.2 9 bp overlap
BATF 1 dataset
Motif ES_0h ES_0h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif ES_0h ES_0h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif ES_0h ES_0h-BNC2_MA1928.2 7 bp overlap
BRD4 2 datasets
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 198 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 364 bp overlap
CDX1 1 dataset
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif ES_0h ES_0h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 156 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 131 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 161 bp overlap
CTCF 1 dataset
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 259 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 232 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 118 bp overlap
ESR1 23 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 311 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 134 bp overlap
ChIP MCF-7_E2 GSE108883.ESR1.MCF-7_E2 182 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 254 bp overlap
ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 201 bp overlap
ChIP MCF-7_RAD1901 GSE115607.ESR1.MCF-7_RAD1901 139 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 254 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 180 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 233 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 345 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 291 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 283 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 225 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 266 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 263 bp overlap
ChIP MCF-7_shFbxo_E2_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_SRC-3 157 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 263 bp overlap
ChIP MCF-7_shFbxo_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_SRC-3 157 bp overlap
ChIP MCF-7_shKMT2C GSE100328.ESR1.MCF-7_shKMT2C 93 bp overlap
ChIP MCF-7_shKMT2C_R GSE100328.ESR1.MCF-7_shKMT2C_R 346 bp overlap
ChIP MCF-7_talen GSE94493.ESR1.MCF-7_talen 136 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 224 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 149 bp overlap
ESRRA 1 dataset
Motif ES_0h ES_0h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif ES_0h ES_0h-ESRRB_MA0141.4 10 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 235 bp overlap
Esrrg 1 dataset
Motif ES_0h ES_0h-Esrrg_MA0643.2 9 bp overlap
FOSL2 1 dataset
Motif ES_0h ES_0h-FOSL2_MA0478.2 10 bp overlap
FOXA1 18 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 166 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 60 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 126 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 66 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 106 bp overlap
ChIP MCF-7 GSE128445.FOXA1.MCF-7 165 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 170 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 107 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 107 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 153 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 179 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 169 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 121 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 232 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 98 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 104 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 62 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 370 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 75 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 229 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 386 bp overlap
GATA2 1 dataset
ChIP WA09 GSE105081.GATA2.WA09 307 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 109 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 321 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 158 bp overlap
GATA4 2 datasets
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 386 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 386 bp overlap
GATA6 3 datasets
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 316 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 344 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 386 bp overlap
HNF4A 1 dataset
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
HOXA10 1 dataset
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 386 bp overlap
HOXD9 1 dataset
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hoxd13 1 dataset
Motif ES_0h ES_0h-Hoxd13_MA0909.4 7 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 284 bp overlap
JUND 1 dataset
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 205 bp overlap
Jun 1 dataset
Motif ES_0h ES_0h-Jun_MA0489.3 8 bp overlap
MAFK 1 dataset
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
Mafg 1 dataset
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 174 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 129 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 386 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 220 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 147 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 386 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 386 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 276 bp overlap
ChIP hESC GSE20650.NANOG.hESC 126 bp overlap
NR1H2 2 datasets
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 386 bp overlap
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 337 bp overlap
NR1I2 1 dataset
Motif ES_0h ES_0h-NR1I2_MA1533.2 15 bp overlap
NR2C1 2 datasets
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
NR5A1 1 dataset
Motif ES_0h ES_0h-NR5A1_MA1540.3 12 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 155 bp overlap
Nr1H2 2 datasets
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 1 dataset
Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 188 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 386 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 295 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 386 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 386 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 386 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 60 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 266 bp overlap
PPARD 1 dataset
Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 382 bp overlap
RARA 3 datasets
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
Motif ES_0h ES_0h-RARA_MA0730.1 17 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 296 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 183 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 184 bp overlap
RXRB 1 dataset
Motif ES_0h ES_0h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif ES_0h ES_0h-RXRG_MA0856.1 14 bp overlap
Rarb 1 dataset
Motif ES_0h ES_0h-Rarb_MA0858.1 17 bp overlap
Rarg 1 dataset
Motif ES_0h ES_0h-Rarg_MA0860.1 17 bp overlap
Rxra 1 dataset
Motif ES_0h ES_0h-Rxra_MA0512.2 14 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 231 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 255 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 232 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 193 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 201 bp overlap
SOX9 1 dataset
ChIP HT29 GSE63629.SOX9.HT29 386 bp overlap
STAT3 11 datasets
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 381 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 386 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 386 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 354 bp overlap
ChIP MCF-7_jc5842 GSE126004.STAT3.MCF-7_jc5842 182 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 386 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 354 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 168 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 194 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 303 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 171 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 187 bp overlap
TAL1 1 dataset
ChIP erythroid GSE42390.TAL1.erythroid 131 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 254 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 191 bp overlap
THRB 1 dataset
Motif ES_0h ES_0h-THRB_MA1574.2 13 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 184 bp overlap
ZNF136 1 dataset
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 206 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 161 bp overlap