chr5 : 37,825,596 – 37,825,783
187 bp 83 TFs 1 linked gene
This 187 bp open chromatin element is linked to GDNF and is bound by 83 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GDNF 9.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:37,820,596 – 37,830,783
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 56 bp overlap
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 128 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 143 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 187 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 187 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 148 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 182 bp overlap
BRD4 7 datasets
ChIP HEK293T GSE51633.BRD4.HEK293T 126 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 187 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 187 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 187 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 187 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 148 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 156 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 187 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 85 bp overlap
ESR1 22 datasets
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 172 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 88 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 187 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 187 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 187 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 187 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 55 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 178 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 187 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 187 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 187 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 61 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 187 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 175 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 185 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 187 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 187 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 139 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 139 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 187 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 101 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 187 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 125 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 158 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 146 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 82 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 86 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 111 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 70 bp overlap
ChIP DE DE-FOXA2-2 112 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 149 bp overlap
ChIP DE DE-GATA4-2 187 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 187 bp overlap
ChIP DE DE-GATA6-1 187 bp overlap
ChIP DE DE-GATA6-2 187 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 187 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 187 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 187 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 187 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 187 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 187 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 187 bp overlap
ChIP foregut GSE117136.GATA6.foregut 187 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 183 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 187 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 187 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 187 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 156 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 119 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 147 bp overlap
IRF2BP2 1 dataset
ChIP HEK293 GSE124636.IRF2BP2.HEK293 115 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 187 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 187 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 187 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 187 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 118 bp overlap
ChIP HEK293 ENCFF326EGX 187 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 53 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCFF929IAJ 162 bp overlap
MAX 3 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 132 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 187 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 187 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 187 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 95 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 187 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 137 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 136 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 167 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 187 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 165 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 86 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 141 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 126 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 144 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 56 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 166 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 126 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 187 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 80 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 157 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 54 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 168 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 113 bp overlap
REST 1 dataset
ChIP neural cell ENCFF882LXX 187 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 78 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 129 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 187 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 187 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 187 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 187 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 187 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 187 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 183 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 187 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 185 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 187 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 135 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 165 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 72 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 139 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 55 bp overlap
TCF12 3 datasets
ChIP Ishikawa ENCFF467DDW 136 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 85 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 187 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 187 bp overlap
WT1 1 dataset
ChIP HEK293 ENCFF906HIR 116 bp overlap
YY1AP1 1 dataset
ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 53 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 187 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCFF560VPN 60 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 187 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 187 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 187 bp overlap
ZMIZ1 1 dataset
ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 151 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 153 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 82 bp overlap
ZNF213 1 dataset
ChIP HEK293 ENCSR295GRB.ZNF213.HEK293 187 bp overlap
ZNF30 1 dataset
ChIP HEK293 GSE76494.ZNF30.HEK293 50 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 91 bp overlap
ZNF34 3 datasets
ChIP HEK293 ENCFF481TFV 95 bp overlap
ChIP HEK293 ENCFF481TFV 187 bp overlap
ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 111 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 162 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 187 bp overlap
ZNF423 1 dataset
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 187 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 127 bp overlap
ZNF501 2 datasets
ChIP HEK293 ENCFF066RAQ 187 bp overlap
ChIP HEK293 ENCSR461ZJT.ZNF501.HEK293 159 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 187 bp overlap
ZNF561 2 datasets
ChIP HEK293 ENCFF399XKF 72 bp overlap
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 187 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 53 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 93 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 91 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 134 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 187 bp overlap
ZNF610 1 dataset
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 96 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 183 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 178 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 104 bp overlap
ZNF85 1 dataset
ChIP HEK293 GSE76494.ZNF85.HEK293 76 bp overlap
ZSCAN16 3 datasets
ChIP HEK293 ENCFF533NFT 76 bp overlap
ChIP HEK293 ENCFF533NFT 187 bp overlap
ChIP HEK293 ENCSR864VJE.ZSCAN16.HEK293 54 bp overlap
ZSCAN21 1 dataset
ChIP HEK293 ENCFF582WUP 120 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 131 bp overlap
ZSCAN30 2 datasets
ChIP HEK293 ENCFF082YBI 187 bp overlap
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 118 bp overlap
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