chr4 : 56,874,230 56,874,615
385 bp 86 TFs 0 linked genes
This 385 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:56,869,230 – 56,879,615
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE110655.AR.LNCaP 110 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 169 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 321 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
Atoh1 2 datasets
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap
BCL11A 1 dataset
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BCL6 2 datasets
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
Motif ES_0h ES_0h-BCL6_MA0463.3 13 bp overlap
BRD4 4 datasets
ChIP 22Rv1_DHT-ABBV-075 GSE118247.BRD4.22Rv1_DHT-ABBV-075 214 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 353 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 106 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 107 bp overlap
CDX1 2 datasets
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 159 bp overlap
CDX4 2 datasets
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
CREB1 3 datasets
ChIP LNCaP-abl GSE63034.CREB1.LNCaP-abl 294 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 351 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 373 bp overlap
CTCF 13 datasets
ChIP 22Rv1 ENCFF466OXN 385 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 298 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 212 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 163 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 132 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 224 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 208 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 198 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 200 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 162 bp overlap
ChIP MCF-7 ENCFF198DQX 229 bp overlap
ChIP MCF-7 ENCFF494VXA 229 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 163 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 110 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 160 bp overlap
FOXA1 8 datasets
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 241 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 215 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 314 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 301 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 344 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 301 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 260 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 312 bp overlap
GATA1 2 datasets
Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap
Motif ES_0h ES_0h-GATA1_MA0035.5 7 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HOXA10 2 datasets
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXB13 19 datasets
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
ChIP LNCaP GSE56288.HOXB13.LNCaP 178 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 113 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 238 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 235 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 326 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 291 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 329 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 186 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 318 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 307 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 157 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 195 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 250 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 319 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 180 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 195 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 283 bp overlap
HOXD9 2 datasets
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
KLF5 3 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
ChIP ESO-26 GSE132680.KLF5.ESO-26 385 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 295 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 299 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 148 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 157 bp overlap
MTF1 1 dataset
Motif ES_0h ES_0h-MTF1_MA0863.1 14 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYC 3 datasets
ChIP LNCaP_MYC GSE73994.MYC.LNCaP_MYC 94 bp overlap
ChIP LS174T_BI8622 GSE59223.MYC.LS174T_BI8622 114 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 185 bp overlap
MYCN 3 datasets
ChIP 22Rv1_intact GSE117304.MYCN.22Rv1_intact 345 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 356 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 342 bp overlap
Mecom 2 datasets
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 238 bp overlap
NEUROD1 2 datasets
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 200 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 137 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap
POLR2A 14 datasets
ChIP GM23338 ENCFF450WCS 318 bp overlap
ChIP GM23338 ENCFF450WCS 343 bp overlap
ChIP H1 ENCFF566JSR 377 bp overlap
ChIP MCF-7 ENCFF164XWP 260 bp overlap
ChIP prostate gland ENCFF545MVF 365 bp overlap
ChIP prostate gland ENCFF832RQK 301 bp overlap
ChIP prostate gland ENCFF832RQK 234 bp overlap
ChIP prostate gland ENCFF881OMH 313 bp overlap
ChIP prostate gland ENCFF882MXU 327 bp overlap
ChIP sigmoid colon ENCFF543ARF 288 bp overlap
ChIP sigmoid colon ENCFF543ARF 275 bp overlap
ChIP transverse colon ENCFF098HBD 341 bp overlap
ChIP transverse colon ENCFF193UMS 342 bp overlap
ChIP transverse colon ENCFF840PXT 316 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 7 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 385 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 385 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
ChIP T-47D GSE148277.POU2F1.T-47D 332 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 283 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 3 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 3 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F1 2 datasets
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU4F3 2 datasets
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap
POU5F1 10 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 308 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 290 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 356 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 384 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 142 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 344 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 293 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 221 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 165 bp overlap
POU5F1B 3 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 273 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 333 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 321 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 238 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 195 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 6 datasets
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 203 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 306 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 328 bp overlap
ChIP TT GSE46837.SOX2.TT 183 bp overlap
ChIP hESC GSE18292.SOX2.hESC 100 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 278 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP2 1 dataset
ChIP HEK293 ENCSR807LQP.SP2.HEK293 213 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 185 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TBP 7 datasets
ChIP H1 ENCFF859IIO 301 bp overlap
ChIP K-562 GSE55306.TBP.K-562 215 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 258 bp overlap
ChIP hESC GSE122298.TBP.hESC 346 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 297 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 248 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 239 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 158 bp overlap
YY1 5 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 385 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 385 bp overlap
ChIP Ishikawa ENCFF505XQX 298 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 155 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 113 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 158 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 279 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 258 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 118 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 144 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 277 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 153 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 150 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 217 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap