chr4 : 52,249,772 52,250,646
874 bp 77 TFs 0 linked genes
This 874 bp open chromatin element has no linked target genes and is bound by 77 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:52,244,772 – 52,255,646
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 157 bp overlap
ChIP prostate GSE56288.AR.prostate 176 bp overlap
ARNTL 2 datasets
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 343 bp overlap
ChIP U2OS_trough_DMSO GSE85096.ARNTL.U2OS_trough_DMSO 348 bp overlap
ASCL1 2 datasets
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 209 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 119 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 247 bp overlap
BRD4 4 datasets
ChIP DND41_E GSE54379.BRD4.DND41_E 226 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 805 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 324 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 230 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 97 bp overlap
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 53 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 714 bp overlap
CTCF 1 dataset
ChIP thoracic-aorta ENCSR549TXG.CTCF.thoracic-aorta 252 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 410 bp overlap
ChIP BLaER1 ENCFF274GAT 405 bp overlap
ChIP BLaER1 ENCFF364PUR 251 bp overlap
ChIP BLaER1 ENCFF858JKM 457 bp overlap
EBF1 7 datasets
ChIP ASC GSE54889.EBF1.ASC 243 bp overlap
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP GM12878 ENCFF813OXE 265 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 190 bp overlap
ChIP LCL GSE75503.EBF1.LCL 196 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 539 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 431 bp overlap
EP300 2 datasets
ChIP 697 GSE138031.EP300.697 189 bp overlap
ChIP tibial nerve ENCFF346AYA 344 bp overlap
ESR1 1 dataset
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 172 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 441 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 236 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 192 bp overlap
FOS 1 dataset
ChIP myometrium_PT916 GSE128230.FOS.myometrium_PT916 56 bp overlap
FOSL2 4 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 70 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 367 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 148 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 186 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 370 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 736 bp overlap
ChIP DE DE-FOXA2-2 874 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 391 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 560 bp overlap
ChIP DE DE-GATA4-2 857 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 349 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 512 bp overlap
ChIP DE DE-GATA6-2 874 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 122 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 375 bp overlap
HDAC2 3 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 285 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 349 bp overlap
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 636 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 248 bp overlap
HIF1A 3 datasets
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 291 bp overlap
ChIP U2OS_DMSO GSE85096.HIF1A.U2OS_DMSO 362 bp overlap
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 381 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 874 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 616 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 275 bp overlap
JUN 1 dataset
ChIP leiomyoma_PT886 GSE128230.JUN.leiomyoma_PT886 77 bp overlap
KMT2A 1 dataset
ChIP L826 GSE83671.KMT2A.L826 254 bp overlap
MAX 8 datasets
ChIP NB4 ENCFF966MWB 277 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 467 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 427 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 355 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 297 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 216 bp overlap
ChIP P493-6_4HR GSE125863.MAX.P493-6_4HR 162 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 333 bp overlap
MED1 8 datasets
ChIP RH4 GSE83726.MED1.RH4 333 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 417 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 297 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 282 bp overlap
ChIP hMSC-TERT4_adipocyte-D14 GSE113253.MED1.hMSC-TERT4_adipocyte-D14 234 bp overlap
ChIP hMSC-TERT4_adipocyte-D14 GSE113253.MED1.hMSC-TERT4_adipocyte-D14 73 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 629 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 196 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 55 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 110 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 135 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 303 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 88 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 494 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 836 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 568 bp overlap
MYC 7 datasets
ChIP BL41 GSE30726.MYC.BL41 106 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 183 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 498 bp overlap
ChIP P493-6 GSE42262.MYC.P493-6 207 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 226 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 313 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
MYCN 7 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 363 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 177 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 185 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 525 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 193 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 214 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 228 bp overlap
MYOD1 4 datasets
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 378 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 267 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 291 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 144 bp overlap
MYOG 3 datasets
ChIP RH4 GSE83726.MYOG.RH4 206 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 361 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 328 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 125 bp overlap
NR3C1 3 datasets
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 232 bp overlap
ChIP NALM-6 GSE67046.NR3C1.NALM-6 190 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 310 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 305 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 338 bp overlap
PGR 4 datasets
ChIP AB32 GSE31129.PGR.AB32 231 bp overlap
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 238 bp overlap
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 386 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 372 bp overlap
POLR2A 6 datasets
ChIP esophagus muscularis mucosa ENCFF791ZXN 531 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 106 bp overlap
ChIP sigmoid colon ENCFF748YVT 445 bp overlap
ChIP sigmoid colon ENCFF754JQR 365 bp overlap
ChIP suprapubic skin ENCFF748PRQ 277 bp overlap
ChIP transverse colon ENCFF610RWV 425 bp overlap
POU2AF1 1 dataset
ChIP pre-B-cell GSE107886.POU2AF1.pre-B-cell 261 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 295 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 236 bp overlap
RBPJ 3 datasets
ChIP MUTUL GSE75503.RBPJ.MUTUL 216 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 155 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 334 bp overlap
RELA 2 datasets
ChIP SGBS GSE64233.RELA.SGBS 190 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 300 bp overlap
RUNX1 3 datasets
ChIP 697 GSE138031.RUNX1.697 90 bp overlap
ChIP 697 GSE138031.RUNX1.697 198 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 380 bp overlap
SMARCA2 6 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 364 bp overlap
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 253 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 225 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 355 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 87 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 812 bp overlap
SMARCA4 11 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 836 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 838 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 214 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 311 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 94 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 182 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 138 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 459 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 106 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 453 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 236 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 366 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 138 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 301 bp overlap
SRF 5 datasets
ChIP GM12878 ENCFF878IIX 197 bp overlap
ChIP GM12878 ENCSR041XML.SRF.GM12878 114 bp overlap
ChIP Ishikawa ENCFF992QXM 161 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 91 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 120 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 392 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 289 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 249 bp overlap
TCF12 1 dataset
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 178 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 245 bp overlap
TCF3 2 datasets
ChIP 697_HF GSE138031.TCF3.697_HF 261 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 597 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 76 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 173 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 156 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 442 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 139 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 188 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 180 bp overlap
ZNF605 1 dataset
ChIP HEK293T GSE78099.ZNF605.HEK293T 257 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 357 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 212 bp overlap