chr4 : 41,620,515 41,621,216
701 bp 81 TFs 1 linked gene
This 701 bp open chromatin element is linked to LIMCH1 and is bound by 81 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LIMCH1 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:41,615,515 – 41,626,216
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 170 bp overlap
ChIP MCF-7 GSE144036.AFF4.MCF-7 243 bp overlap
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 444 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 335 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 526 bp overlap
ARNT 2 datasets
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 283 bp overlap
ChIP RCC10 GSE101063.ARNT.RCC10 358 bp overlap
ATF3 3 datasets
ChIP H1 ENCFF852GZY 241 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 225 bp overlap
ChIP WA01 ENCSR000BKC.ATF3.WA01 246 bp overlap
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 215 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 162 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
BRD2 1 dataset
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 186 bp overlap
CEBPB 9 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 249 bp overlap
ChIP HepG2 ENCFF536NTI 221 bp overlap
ChIP Ishikawa ENCFF010USJ 261 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 135 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 131 bp overlap
ChIP MCF-7 ENCFF772ZTQ 277 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 196 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 263 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 198 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 542 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 296 bp overlap
ChIP BLaER1 ENCFF335XTP 303 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 197 bp overlap
EPAS1 1 dataset
Motif DE_12h DE_12h-EPAS1_MA2325.1 9 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 235 bp overlap
ESR1 13 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 193 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 412 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 370 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 317 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 167 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 310 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 231 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 453 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 240 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 204 bp overlap
ChIP T-47D_siFOXA1-IL6 GSE126004.ESR1.T-47D_siFOXA1-IL6 277 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 490 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 237 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 4 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 528 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 95 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 288 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 241 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 157 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 446 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 551 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 351 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 499 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 449 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 580 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 422 bp overlap
HIF1A 2 datasets
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
ChIP RCC10 GSE101063.HIF1A.RCC10 351 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 205 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 371 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 185 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 547 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 484 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 478 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 357 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 701 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 148 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 102 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 299 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 443 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 146 bp overlap
MED1 2 datasets
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 373 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 213 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94782.MYCN.Kelly 183 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 450 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 194 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 523 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 550 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 509 bp overlap
ChIP hESC GSE18292.NANOG.hESC 210 bp overlap
NCOA1 1 dataset
ChIP LS180 GSE39277.NCOA1.LS180 83 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 166 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 234 bp overlap
NR3C1 1 dataset
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 165 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 187 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 373 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 429 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF446ZGT 212 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 158 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP GM23338 ENCFF333SNB 201 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 524 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 375 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 701 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 183 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 377 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 191 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 575 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 463 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 241 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 384 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 486 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 310 bp overlap
RAD21 6 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 567 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 560 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 701 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 562 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 166 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 324 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 185 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 287 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 191 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 454 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 524 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 457 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 348 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 383 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 61 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 318 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 264 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 334 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 282 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 277 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 271 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 701 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 244 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 229 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 349 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 156 bp overlap
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 344 bp overlap
ChIP hESC GSE18292.SOX2.hESC 188 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 395 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 214 bp overlap
SPI1 3 datasets
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 170 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 182 bp overlap
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 220 bp overlap
STAT3 14 datasets
ChIP BT-474 GSE152203.STAT3.BT-474 232 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 348 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 323 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 383 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 279 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 569 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 278 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 279 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 155 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 189 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 299 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 354 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 456 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 297 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 207 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 314 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 367 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 322 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 157 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
ChIP SK-N-SH ENCFF869XXQ 248 bp overlap
TFAP2C 4 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 701 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 531 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 158 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 489 bp overlap
TRIM28 4 datasets
ChIP HEK293 ENCFF582MWI 662 bp overlap
ChIP HEK293 ENCFF582MWI 457 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 369 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 283 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 323 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 199 bp overlap
VDR 1 dataset
ChIP LS180_125 GSE31939.VDR.LS180_125 166 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 269 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap