chr4 : 32,003,610 – 32,004,158
548 bp 115 TFs 1 linked gene
This 548 bp open chromatin element is linked to LINC02506 and is bound by 115 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02506 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:31,998,610 – 32,009,158
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 282 bp overlap
Arid3b 1 dataset
Motif DE_12h DE_12h-Arid3b_MA0601.2 7 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
BCLAF1 1 dataset
ChIP K-562 ENCSR000BKH.BCLAF1.K-562 222 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 249 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 348 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 347 bp overlap
CTCF 13 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 174 bp overlap
ChIP LNCAP ENCFF223HIG 420 bp overlap
ChIP LNCAP ENCFF700QXT 414 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 328 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 304 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 140 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 165 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 100 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 109 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
E2F6 1 dataset
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ERF::FIGLA 1 dataset
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 3 datasets
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 230 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 293 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 239 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 189 bp overlap
FOXA1 6 datasets
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 149 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 275 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 247 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 192 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 244 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 164 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXJ2 2 datasets
ChIP K562 ENCFF457GZC 216 bp overlap
ChIP K562 ENCFF457GZC 458 bp overlap
FOXK1 1 dataset
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 548 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 548 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 548 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 528 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HOXD11 2 datasets
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 392 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
JUN 3 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 323 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Lhx3 2 datasets
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MEIS2 2 datasets
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
MYF6 1 dataset
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 277 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 310 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 431 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 377 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 325 bp overlap
NEUROD1 1 dataset
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
PGR 2 datasets
Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 147 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PML 2 datasets
ChIP K-562 ENCSR000BQY.PML.K-562 236 bp overlap
ChIP K-562 ENCSR000BQY.PML.K-562 166 bp overlap
POLR2A 2 datasets
ChIP K562 ENCFF262YXJ 341 bp overlap
ChIP K562 ENCFF514URW 307 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 176 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 166 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 256 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 171 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 141 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 322 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
RBFOX2 6 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 401 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 401 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 79 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 79 bp overlap
ChIP K562 ENCFF967GRF 307 bp overlap
ChIP K562 ENCFF967GRF 95 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 271 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 291 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SIN3A 1 dataset
ChIP K-562 ENCSR000BLR.SIN3A.K-562 235 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 548 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 548 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 487 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 396 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 427 bp overlap
SMAD5 1 dataset
ChIP K-562 ENCSR000FCD.SMAD5.K-562 548 bp overlap
SMARCA4 6 datasets
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 63 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 317 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 264 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 217 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 169 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 196 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 359 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 296 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 296 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 185 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 128 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF8 1 dataset
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
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